Query= MSMg01no146_n24.b1 MSMg01no146_n24.b1 CHROMAT_FILE:
MSMg01no146_n24.b1 PHD_FILE: MSMg01no146_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:10 2005
(180 letters)
>mm_chr6_83134432_83135010
Length = 579
Score = 333 bits (172), Expect = 5e-96
Identities = 178/180 (98%), Gaps = 1/180 (0%)
Strand = Plus / Plus
Query: 1 atcatgcccagctcctcaccaggagcttttaaacacttagattgctgccatgacttcctc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatgcccagctcctcaccaggggcttttaaacacttagattgctgccatgacttcctc 260
Query: 61 acaccagccttgccttgggcctccccacaagttctttctgccctgcatgttcctgtctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaccagccttgccttgggcctccccacaagttctttctgccctgcatgttcctgtctga 320
Query: 121 gccgtgtgtgcagtacctgtgagccctttgttgccagcctgtctcgggccttcctgatgt 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccgtgtgtgcagtac-tgtgagccctttgttgccagcctgtctcgggccttcctgatgt 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 579
Length adjustment: 8
Effective length of query: 172
Effective length of database: 571
Effective search space: 98212
Effective search space used: 98212
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no146_n24.g1 MSMg01no146_n24.g1 CHROMAT_FILE:
MSMg01no146_n24.g1 PHD_FILE: MSMg01no146_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:10 2005
(629 letters)
>mm_chr6_83205785_83206813
Length = 1029
Score = 1154 bits (597), Expect = 0.0
Identities = 618/625 (98%)
Strand = Plus / Minus
Query: 5 aagtccagctgtcacctggagaaccaaggcgctaaagccagctatgtggaggagtttgcc 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 698 aagtccagctgtcacctggagaaggaaggcgctaaagccagctatgtggaggagcttgcc 639
Query: 65 ctctcaggaaatctagaatcacagacaggatggacgtgatggagtaaggaggccttggac 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 638 ctctcaggaaatctagaatcacagacaggatggacgtgatggagtagggaggccttggac 579
Query: 125 agcgagcagaggcatcacccgaccaggcctcccattcagaggcagctccagacagctggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agcgagcagaggcatcacccgaccaggcctcccattcagaggcagctccagacagctggc 519
Query: 185 agagtccccagggaagctaagcgtcccagctgcagactccagtccaccatagtgacagat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agagtccccagggaagctaagcgtcccagctgcagactccagtccaccatagtgacagat 459
Query: 245 catccctgaaacactgggcagcttctacctgcaccaactggaacctgaagggaagtgttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 catccctgaaacactgggcagcttctacctgcaccaactggaacctgaagggaagtgttc 399
Query: 305 ggggccacctgtttttaaagtccccctgaaaagcaagtttatggggtcagtggggaatag 364
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 398 ggggccacctgcttttaaagtccccctgaaaagcaagtttatggggtcagtggggaatgg 339
Query: 365 tctaaaaaggaagaggactgggggtggacatcccttagcggacattaagccgcagcctgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tctaaaaaggaagaggactgggggtggacatcccttagcggacattaagccgcagcctgg 279
Query: 425 aaaagcttcagctgggccagtgagattgttcacaggtgggagcatagctaccaaccatga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaaagcttcagctgggccagtgagattgttcacaggtgggagcatagctaccaaccatga 219
Query: 485 gctgcagggttgtttcctttccttccaccatgtgggttccaggaatcaaacgtagtcact 544
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gctgcagggttgttttctttccttccaccatgtgggttccaggaatcaaacgtagtcact 159
Query: 545 aggcctggcagcaagcacctttacctgctgagccatctctgtagctagtgtcaaactcac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 aggcctggcagcaagcacctttacctgctgagccatctctgtagctagtgtcaaactcac 99
Query: 605 aaccctttccttcacctcccaggta 629
|||||||||||||||||||||||||
Sbjct: 98 aaccctttccttcacctcccaggta 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
