Query= MSMg01no146_o15.b1 MSMg01no146_o15.b1 CHROMAT_FILE:
MSMg01no146_o15.b1 PHD_FILE: MSMg01no146_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:16 2005
(659 letters)
>mm_chr6_109430178_109431236
Length = 1059
Score = 1195 bits (618), Expect = 0.0
Identities = 650/666 (97%), Gaps = 13/666 (1%)
Strand = Plus / Plus
Query: 1 aaaggcaattagaaaccacttatttgattttacct-aacagtaagaatttccccc----- 54
|||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 201 aaaggcaattagaaaccacttatttgattttag-tgaacagtaagaattt-----tagtt 254
Query: 55 accagtgtttttaatccctgtttgtttcataactgaccaactccagccatttatgttata 114
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 255 accagtgtttttaatccctgtttgtttcataactgaccaactgcagccatttatgttata 314
Query: 115 tgtcaagaacccagtaaacaaagcaaacaaaccagcaaacaaataaaaaaatgctttgct 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgtcaagaacccagtaaacaaagcaaacaaaccagcaaacaaataaaaaaatgctttgct 374
Query: 175 acgagcacttgttttcagcctagtgttagggagaggaagtataatttacactagcaacat 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 acgagcacttgttttcagcctagtgttagggagaggaagtataatttacactagcaacat 434
Query: 235 cttttatgattattaataatagaaaccatttaatctgtttattatattgctatgaattac 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cttttatgattattaataatagaaaccatttaatctgtttattatattgctatgaattac 494
Query: 295 actagaaatataaactttttcaatgctatctctccaacagtgcaatgatgtaaagtatat 354
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 495 actagaaatataaactttttcaatgcaatctctccaacagtgcaatgatgtaaagtatat 554
Query: 355 aattatttaggaagtttacagaactacctgtgcttgaaaagtcaagatagtctatgaagc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aattatttaggaagtttacagaactacctgtgcttgaaaagtcaagatagtctatgaagc 614
Query: 415 ttattctattttttgctgtgtgcatgcttacctgtgtgtgtacatgtttgtgcatgcata 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttattctattttttgctgtgtgcatgcttacctgtgtgtgtacatgtttgtgcatgcata 674
Query: 475 agtatgtatatgcatgtatgtgtacatacacatgtgtgtatgcatatgcatgcatacata 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agtatgtatatgcatgtatgtgtacatacacatgtgtgtatgcatatgcatgcatacata 734
Query: 535 tgcagaaggaatatgtatggagcactgtgtgcatgcttgtgtgtatgtatatgtgtgtga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgcagaaggaatatgtatggagcactgtgtgcatgcttgtgtgtatgtatatgtgtgtga 794
Query: 595 acctatatatgcaggccacagatcagtgttggatatttttatttaggtgctttttttttt 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 acctatatatgcaggccacagatcagtgttggatatttttatttaggtgctttttttttt 854
Query: 655 -aaaga 659
|||||
Sbjct: 855 taaaga 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_o15.g1 MSMg01no146_o15.g1 CHROMAT_FILE:
MSMg01no146_o15.g1 PHD_FILE: MSMg01no146_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:16 2005
(498 letters)
>mm_chr6_109505020_109505915
Length = 896
Score = 656 bits (339), Expect = 0.0
Identities = 440/499 (88%), Gaps = 45/499 (9%)
Strand = Plus / Minus
Query: 1 ggatgtttcccattgaataaatgcaaaatacatctttgactatttaacag---gccccgg 57
||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||
Sbjct: 461 ggatgtttcccattgaataaatgcaaaatgcat-gttgactatttaacaggaag----gg 407
Query: 58 tcttctccagtactgatggagggtaaaataagtagttagctgcccacatgaatggattcc 117
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcttccccagtactgatggagcataaaataagtagttagctgcccacatgaatggattcc 347
Query: 118 atgcagggagacagtcaggtaagtcatacttcctgtccagtactgtcagtttggccatca 177
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 atgcatggagacagtcaggtaagtcatacttcctgtccagtactgtcagtttggccatca 287
Query: 178 ctgccaggcgtctttagtggagggttctcattatttccctcagtaggaacataaggactc 237
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctgccaggggtctttagtggagggttctcattatttccctcagtaggaacataaggactc 227
Query: 238 tgtaaaatttatgtgttgcctcacaaaaacaaacaaacaaacaaacaaacaaacaaaaaa 297
||||||||||||||||||||||||||||| |||||
Sbjct: 226 tgtaaaatttatgtgttgcctcacaaaaa-------------------------aaaaa- 193
Query: 298 caatattctttagaattcccctttctgttttca----aggaactaaagggaactgcaacc 353
|||||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct: 192 ---tattctttagaattcccctttctg----cacccaaggaactaaaggtaactgcaacc 140
Query: 354 ctataggtggaacaacaatatgaactaacaagtatcccggagctcttgtctctagctgca 413
||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||| |
Sbjct: 139 ctataggtggaacaacaatatgaactaaccagtaccccggaactcttgtctttagctgta 80
Query: 414 tatgtatcaaaagatggcctagtaggccatcactggaaagagaggcccattggacttgca 473
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 79 tatgtatcaaaagatggcctagtcggccatcactggaaagagaggcccattggacttgca 20
Query: 474 aactttatatgccccagta 492
|||||||||||||||||||
Sbjct: 19 aactttatatgccccagta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 896
Length adjustment: 10
Effective length of query: 488
Effective length of database: 886
Effective search space: 432368
Effective search space used: 432368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
