CACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCAACATAAAATGAAATATATTTTTAAAGCAGAACTTCCATGTAA
TTCTTAATGGATGTAAGATTTCTTTAGAAAAGTAATTATTAATTCATTAA
GTATTCCATATAAGTTGATCATATTAACACATTTGCCTCCATCTCATCTC
TTCCAAATCCTCTCTCCCTTTCATCACTCACCCAGCTTTGAGTTTCCTTT
TTAACCAATTAAGACCAATTTGTGACACCCAAATATTCATGGATATTGAG
TTTTCCACTGGAGTAGGCTCATCCTCCAAGGGACTCGGGGAAAACTGATC
CCTTTCCCCCCTAAATGATCAATTTTGAACGGCTATGGATTATACAGGTG
GAGATTCATGCTCGTCTCCTCTGGGAAGGCCAGAATTTTTTCAGACATGA
GCTTGCATGCTCTGGTCTTGTGTGAATTTATGTGTGAAGTTACATGTTCT
GTCCACTTCTGTGAAACAGTTTTTCTTAAGTCTTCCACTGCCTCTAGCTT
TGAGAATTTCAATGTCCCTTCTTACACAATTATCCCTGAGCTTGTGGGTA
GAACTTTTGGAGTTGTAGTAAATATAGTCCATCCATGGCTGAACATTCAG
TAATATATTAGTCTCTATAGTAGGGCAATTGGAAGACTTTGTGTCAATAA
CCCTCTACTTTTAAGTATGTACTAAT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTCAAAGCAAACAGAAGAAGAATGTTGTGAGAAATA
TAAAGCAATCTCTCAAAACCAAAACAATAAAGAAGTCCAATAAGGAAAGC
AGTGAGAAGCTTGGAGAGAAAGTTACCACATACACAGTCCAGACTTGTAG
AGGAGGGGATAGGAATGGTAATAAGAATTTATAAATCTTATACAGCAAAT
ATCATGAGGAGCTAGAGTCCAATGGTTAACAGCACATGCTACACTTGATT
GGGACTGGAATTCACTAAGACTCACAGTCACATCTAACTCCAATTTCAAG
ACATCCATTGCCCTCTTGTAGGCTCAGTGGGCACCAGATGCACCACTATT
TGAACATTCATAAATATATGCAAACACACAGCCATACATTTAAAATAAAT
CATTTTAAACATAAAGTTTCTTCACATAAAAGAGTCTACATTTTAAATTT
TTATTCATGAAATTTTACACAGTAGAAAGGAAAAGAAGATGCAAAGTGCT
TTTATAAATAAATAAGAGGTTCTACGAAAATGACTAAATGTTGTGTCAGA
ATGATGCTCCTGAAGAGCAAGTAAGAGCAAGCTGACTGAGGCTTTAAATG
TCTTGAAGGAAAGGCTCTAACCCACATCATCACTGTGAGATTAGATTAAA
ATTGTTTTCAGTAGGGTAG

Query= MSMg01no147_a20.g1 MSMg01no147_a20.g1 CHROMAT_FILE:
MSMg01no147_a20.g1 PHD_FILE: MSMg01no147_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:32 2005
         (648 letters)



>mm_chr6_45236580_45237627
          Length = 1048

 Score = 1183 bits (612), Expect = 0.0
 Identities = 634/648 (97%), Gaps = 11/648 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcaaagcaaacagaagaagaatgttgtgagaaatataaagcaatctctcaaaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcaaagcaaacagaagaagaatgttgtgagaaatataaagcaatctctcaaaaccaa 260

                                                                       
Query: 61  aacaataaagaagtccaataaggaaagcagtgagaagcttggagagaaagttaccacata 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aacaataaagaagtccaataaggaaagcaatgagaagcttggagagaaagttaccacata 320

                                                                       
Query: 121 cacagtccagacttgtagaggaggggataggaatggtaataagaatttataaatcttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagtccagacttgtagaggaggggataggaatggtaataagaatttataaatcttata 380

                                                                       
Query: 181 cagcaaatatcatgaggagctagagtccaatggttaacagcacatgctacacttgattgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcaaatatcatgaggagctagagtccaatggttaacagcacatgctacacttgattgg 440

                                                                       
Query: 241 gactggaattcactaagactcacagtcacatctaactccaatttcaagacatccattgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactggaattcactaagactcacagtcacatctaactccaatttcaagacatccattgcc 500

                                                                       
Query: 301 ctcttgtaggctcagtgggcaccagatgcaccactatttgaacattcataaatatatgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcttgtaggctcagtgggcaccagatgcaccactatttgaacattcataaatatatgca 560

                                                                       
Query: 361 aacacacagccatacatttaaaataaatcattttaaacataaagtttcttcacataaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacacacagccatacatttaaaataaatcattttaaacataaagtttcttcacataaaag 620

                                                                       
Query: 421 agtctacattttaaatttttattcatgaaattttacacagtagaaaggaaaagaagatgc 480
           |||||||||||||||||||||||| |||||||||||||||||||||           |||
Sbjct: 621 agtctacattttaaatttttattcgtgaaattttacacagtagaaa-----------tgc 669

                                                                       
Query: 481 aaagtgcttttataaataaataagaggttctacgaaaatgactaaatgttgtgtcagaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaagtgcttttataaataaataagaggttctacgaaaatgactaaatgttgtgtcagaat 729

                                                                       
Query: 541 gatgctcctgaagagcaagtaagagcaagctgactgaggctttaaatgtcttgaaggaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gatgctcctgaagagcaagtaagagcaagctgactgaggctttaaatgtcttgaaggaaa 789

                                                           
Query: 601 ggctctaacccacatcatcactgtgagattagattaaaattgttttca 648
           ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 790 ggctctaacccacatcatcactgtgagattagattaaaactgttttca 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)