Query= MSMg01no147_b02.b1 MSMg01no147_b02.b1 CHROMAT_FILE:
MSMg01no147_b02.b1 PHD_FILE: MSMg01no147_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:33 2005
(513 letters)
>mm_chr6_68303454_68304364
Length = 911
Score = 460 bits (238), Expect = e-134
Identities = 435/508 (85%), Gaps = 38/508 (7%)
Strand = Plus / Minus
Query: 4 ggaattcatatctcaataataatatgtgagagctttgtgatatgtggtgctttgaatatg 63
|||||||||||||||||||||||||||||||||| |||| ||| || |||||| || ||
Sbjct: 490 ggaattcatatctcaataataatatgtgagagctgtgtggtatatgatgcttt-aagata 432
Query: 64 agatttctcataaggcttagaatttatacgcttgatttcagcgttttgcatatcttttgc 123
|||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct: 431 agatttctcataaggcttagaatttaaacacttgatttcagcgttttgcatatcctttgc 372
Query: 124 tccccaccctgcctcccccactcccaaagagggacacagacaacgagggtctttttata- 182
| |||| | |||||||| ||| |||||| |||||||||||||| ||||||||||||| |
Sbjct: 371 t-cccatcatgcctccctcacccccaaaaagggacacagacaaggagggtctttttacac 313
Query: 183 ttcagctactccctgtaaataaagaattgggagacaaagatataaagggttcccgacaag 242
|| |||| ||||| ||||||||||||||||| |||||| || |||||| ||| ||| ||
Sbjct: 312 tt-agcttttccctataaataaagaattgggacacaaaggtacaaagggctccagaccag 254
Query: 243 gtgtttcattgatataaagtgagaaatataaccttttgatgcttaaagat-gatataaag 301
|| ||||||||||||||||||||||||||||||||||||| ||| ||||| | ||| |||
Sbjct: 253 gtatttcattgatataaagtgagaaatataaccttttgatactttaagattg-tatgaag 195
Query: 302 atatattgcgtta-t---tcttacaggatactcatattctgtctaaaatgggct-ca-at 355
||||||||| ||| | |||||||||||||||||||||||||||| ||||||| || |
Sbjct: 194 atatattgctttaataagtcttacaggatactcatattctgtctaacatgggctgcaca- 136
Query: 356 gagaatttt-gggtttaaatcctggtttgacaagctgcctctta-ca--agcctgtatag 411
| ||||||| ||| | |||||||||||||||||||||||||||| || || ||||||
Sbjct: 135 g-gaatttttgggctgaaatcctggtttgacaagctgcctcttatcagcag---gtatag 80
Query: 412 aaaggaa---agaaaaggaaagggaaagggaaagggaaaggga-aagggaaagggaaagg 467
||||||| |||| ||||||| ||||| ||||| || ||| |||| |||||||| |
Sbjct: 79 aaaggaatggagaa--ggaaagg-aaagg-aaagg--aatggagaagg-aaagggaa--g 29
Query: 468 gaaagggaaaggga-aagggaaagggaa 494
|||||| || ||| |||| ||||||||
Sbjct: 28 gaaagg--aatggagaagg-aaagggaa 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 911
Length adjustment: 10
Effective length of query: 503
Effective length of database: 901
Effective search space: 453203
Effective search space used: 453203
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_b02.g1 MSMg01no147_b02.g1 CHROMAT_FILE:
MSMg01no147_b02.g1 PHD_FILE: MSMg01no147_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:33 2005
(581 letters)
>mm_chr6_67795491_67796470
Length = 980
Score = 971 bits (502), Expect = 0.0
Identities = 562/582 (96%), Gaps = 3/582 (0%)
Strand = Plus / Plus
Query: 1 tcactcttataccatcaatatacactttcataggaaggtataatgcaaaaccaaaatcat 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactcttataccatcaatatatactttcataggaaggtataatgcaaaaccaaaatcat 260
Query: 61 ttagtagttaatgcaatttaagacctatggataaatgaaagctgagtgtttctggaaatt 120
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 261 ttagtagttaatgcaatttaagacctaag-ataaatgaaagctgagtgtttctggaaatt 319
Query: 121 ccttcatatttgcacatatcattaaagtaggtgtggtaagaattcagatcccagatgacc 180
|||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 320 ccttcatatttgtacatatcattgaagtgggtgtggtaagaattcagatcccagatgacc 379
Query: 181 tgcatattaatgatttacttgttttgatttaaaggaaatgtatatcctcatattcatatc 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 tgcatattaatgatttacttgttttgatttaaaggacatgtatatcctcatattcatatc 439
Query: 241 tactaaaagtgtcctaagagaatcttcctcagatcctgaggctatcaggtgagaactcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tactaaaagtgtcctaagagaatcttcctcagatcctgaggctatcaggtgagaactcag 499
Query: 301 aaatgtcttccaagcctcaaaaatccaagagaagcagatacactacatgtcagcagagag 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 aaatgtcttccaagcctcaaaaatccaagagaagcagatacactagatgtcagcagagag 559
Query: 361 agaatttagggaagaggcagagaaggcagctttactattaactcatccaaaagctgctgc 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 agaatttagggaagaggcagagaaggcagcattactattaactcatccaaaagctgctgc 619
Query: 421 agggtactcctggtggggatagtgctctgtatattgaagaagataccttaggaccaggtg 480
| ||||||||||||| |||| ||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 620 acggtactcctggtgcggatggtgctctgtctattgaagaagctaccttatgaccaggtg 679
Query: 481 tttgttctcctcatcactcaagtccaggccgctggaaaatcagtgga-ttcaggcacagg 539
|||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 680 tttgttctcctcatcactcaagtccaggcccctggaaaatcagtg-agttcaggcacatg 738
Query: 540 ctgcaacagtctctgtcctttcataggcatatttgtttttgt 581
||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 739 ctgcaacagtctctgtcctttcataggtatatttgtttttgt 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 980
Length adjustment: 10
Effective length of query: 571
Effective length of database: 970
Effective search space: 553870
Effective search space used: 553870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
