BAC Information

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BAC

Clone NameMSMg01-147C05
Chromosome6 (Build37)
Map Location 4,679,740 - 4,680,233
singlet/doubletsinglet
Overlap geneSgce
Upstream geneCalcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2, Casd1
Downstream genePeg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2, Asb4, Pdk4, Dync1i1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147C05.T7 (MSMg01no147_c05.b1)MSMg01-147C05.TJ (MSMg01no147_c05.g1)
ACCAG350488AG350489
length712736
length of high quality
(start - end)		497 (54 - 550)283 (72 - 354)
definitionCHROMAT_FILE: MSMg01no147_c05.b1 PHD_FILE: MSMg01no147_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:38 2005CHROMAT_FILE: MSMg01no147_c05.g1 PHD_FILE: MSMg01no147_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNAACATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGCTCCTAGTCTGAGAAGATGAGTCTGAGCCAAGTTA
ACAGTAACTGTGATAGTAATTTTTAATTTGACATTAATTTCATGTCTCTG
TGTGCATTTGTTTTATTCTGAAAAGCTTTTTTATTAAGCTGTGCCGATGG
CATAAATGGAACAGTTAACTGGAAGACCAAACAAGCCAGCAGTTTTAGTA
TCAGCAGGAAACTGGCTGCTGGGAAGAAAGATGGTGAGTTAGGCTTTAAA
TGTAAGTCCTCAATTGGCTGTCAGTGTTTGCTTCCAGTGCTCTTTTGTTA
CGTTTTAGTCCTGTGTCAGTGAGTGTTTAATAAATCAGTCTGAAAAAAAA
TTTTTGTTTTCCTAATCTTCTAAAAAACTTCTGATCCTCTTGTGTTGTTA
GTGCATTATTTCTGTTTTTTATAAACTAAAAAAAAAAAAAAATCCTCTCG
TTTTTAACCTTCGCCCCTTATCCAGTCTCTATCATGACACTTATAGAACC
GTTCACGTGTGCTTACTAGTCTAATTTATTTAAAGCATTGAAAAACACTA
AGAAGTACAATTAATGATATTGTTTTAAAGCAGTCTTTGTAATCTTAAAG
AAAAAATGCCCTAAATATTTTGTCTAATTTTGGGGGATTTGATTGTAAGC
CAAATTGATGTT

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTAAAGGAAAATGAATTTTAGTAGTGGG
GGTCATTGGGCATGTTAAACTACACTTATCAATTTGCATTTCTCATCATA
AAATTCTAGTTCCCTTCCTTCCTTCCTTCCTTCCTCCCTTCCTTCCTTCC
TCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTATGTGACCTAAAGGTTT
ATAGTTCTCTTAGATATCTATAAGCATTGTGTGTGTGTGTGTGTGTGTGT
GTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GATATATACCGACACCCTTCTCCCCCCCCCCCACTACTTCCTCATCCCCC
TCACTCTTTCCCCCCCCCCCTTCTTTTTGTTCTTTTTTTTCCCCCCCCAC
TTTCCCCCCCCCCTCCTCCCCACTCATCCCCCTAATCCATTTCCCTCCTT
ACCCCCTTCCTACGCCTCCTTATTCCCCCCCCCCTTTTTTTCTCCACCCC
CCCTATCGCCATTTTACCCCCTCTTCTCTCTACCCTTTACCCGCCCCTCC
TTTTTCTTTTTTGCCCCTCCTCCCCCCCCCCTTTTCTTTTCCCCATTCGC
CTATTTCACCCCCGCTCACCCCTCTCCCCTCTTTTATCCCCGCCACTCCC
TCCCCTTTTCTTTATATCCCTGTTCCGGTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_c05.b1 MSMg01no147_c05.b1 CHROMAT_FILE:
MSMg01no147_c05.b1 PHD_FILE: MSMg01no147_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:38 2005
         (497 letters)



>mm_chr6_4679620_4680519
          Length = 900

 Score =  911 bits (471), Expect = 0.0
 Identities = 489/497 (98%), Gaps = 6/497 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagctcctagtctgagaagatg-agtctgagccaagttaacagtaactgtgata 62
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 614 ggaattcagctcctagtctgagaagatgtagtctgagccaagttaacagtaactgtgata 555

                                                                       
Query: 63  gtaatttttaatttgacattaatttcatgtctctgtgtgcatttgttttattctgaaaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtaatttttaatttgacattaatttcatgtctctgtgtgcatttgttttattctgaaaag 495

                                                                       
Query: 123 cttttttattaagctgtgccgatggcataaatggaacagttaactggaagaccaaacaag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cttttttattaagctgtgccgatggcataaatggaacagttaactggaagaccaaacaag 435

                                                                       
Query: 183 ccagcagttttagtatcagcaggaaactggctgctgggaagaaagatggtgagttaggct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccagcagttttagtatcagcaggaaactggctgctgggaagaaagatggtgagttaggct 375

                                                                       
Query: 243 ttaaatgtaagtcctcaattggctgtcagtgtttgcttccagtgctcttttgttacgttt 302
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttaaatgtaaatcctcaattggctgtcagtgtttgcttccagtgctcttttgttacgttt 315

                                                                       
Query: 303 tagtcctgtgtcagtgagtgtttaataaatcagtctgaaaaaaaa--tttttgttttcct 360
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 314 tagtcctgtgtcagtgagtgtttaataaatcagtctgaaaaaaaaaatttttgttttcct 255

                                                                       
Query: 361 aatcttctaaaaaacttctgatcctcttgtgttgttagtgcattatttctgttttttata 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aatcttctaaaaagcttctgatcctcttgtgttgttagtgcattatttctgttttttata 195

                                                                       
Query: 421 aactaaaaaaaaaaaaaaatcctctcgtttttaaccttcgccccttatccagtctctatc 480
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aactaaaaaaaaaaaa---tcctctcgtttttaaccttcgccccttatccagtctctatc 138

                            
Query: 481 atgacacttatagaacc 497
           |||||||||||||||||
Sbjct: 137 atgacacttatagaacc 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 900
Length adjustment: 10
Effective length of query: 487
Effective length of database: 890
Effective search space:   433430
Effective search space used:   433430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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