BAC Information

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BAC

Clone NameMSMg01-147G05
Chromosome6 (Build37)
Map Location 41,631,025 - 41,631,464
singlet/doubletsinglet
Overlap genenone
Upstream geneMgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5
Downstream gene1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147G05.T7 (MSMg01no147_g05.b1)MSMg01-147G05.TJ (MSMg01no147_g05.g1)
ACCAG350671AG350672
length711695
length of high quality
(start - end)
472 (82 - 553)440 (69 - 508)
definitionCHROMAT_FILE: MSMg01no147_g05.b1 PHD_FILE: MSMg01no147_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:58 2005CHROMAT_FILE: MSMg01no147_g05.g1 PHD_FILE: MSMg01no147_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTATCAGACCTTCAAGGAAGACCTAAAACCAATCTCTG
TCTGTTAAGCTACTAGTGTATACTCTCTCTAGTTTCTTTTTGGAGGCACT
CAGAGCTATGAATTTTCCTCTTAGCACTGCTTTCATTATGTCCGATAAGG
TTGGGTATGCTGTGCCTTCATTTTCATTAAATTCTAAAAAGTCTCTCATT
TCTTTCTTTATTTCTTCCTTGACCAAGTTATCATTGAGTAGAGCATTGTT
CAGCTTCCATAAGTACGTAGGCTTTCTGTTGTTTTTGTTGTTATTGAAGA
CCAGCCTTAGTTCATGCGATCTGATAGGATGCATGGGATTATTTCAATCT
TTCAACAGTTGAGGCCTGTTTTGTGACTGATTATATATTCAGTTTTGGAG
AAGGTACCATGAGGTGATGAGAAGAAGATATATTCTTTTGTTTTAGGATG
AAATGTTCTGTAGATTTCTGTTAAATACATTTGGTTCATAACTCCTTTTA
GTTTCACTGTGTCTCTATTTAGTTTCTGTTTCCCGGATCTGTCCATTGGT
GAGAGTAGGACTTTGAATCTCCTACTATTATTGTATGAGGTACAATGTGC
GCTTTGAGCTTTATAAAGTTTCTTTTATGAGTGTGGGTGGCCTTGCACTC
TCGGGCCTAGA
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGAAGGTGAAACAGGTACCCTGGGATGTAAAT
CCTAGAACATTCCTGAGGAATTCTGTGTAACTCCTGATGTTAGACAGCAG
AAATTGAGAATGATCAAAGGACAGAGAAACCTTTCTACACTGAGACACTT
TCGACGCGGCAGGAGGAATGGGTTCTGGTAAAGGCAAATGTTCCTTTATC
AAATACTATCTTGCATTGTCTTTATGGCTTTCAGTGAGACATATTACTGT
TGTTGAATGTATTCCTTCAACGGGCCTGTGAGATTAGTGGAAATAAAGCA
AGGGCAGCTTTTGAATGAGAATATATCACACTGAGAGGAAGTGAGCTCTC
TCATCTCCTGGGCTGGAGACAGCATTGAAGCAGGCTTTCAATTCATAGGC
TTGTGACCTTAGTTTCCAATTCATACTTCTCCCGGTCTTTGTACTTCTTA
GGAATCTTTGAGTCAGACAGACTTGGGTGGGATATGCTTGAGACGCTCTC
CTGGAGAGCCTTAGGACCTCCCCTTCCTTTTGAGGTAAATGAGAGTTCTG
ATCCGAGAACCAAATATTTATAGCAGAGCCAGAATGGAAACCAAAGGAGA
TATAGACAGGAACAACAGCTATGGGAAACAAGGGAAAACAAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_g05.g1 MSMg01no147_g05.g1 CHROMAT_FILE:
MSMg01no147_g05.g1 PHD_FILE: MSMg01no147_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:58 2005
         (440 letters)



>mm_chr6_41630825_41631664
          Length = 840

 Score =  828 bits (428), Expect = 0.0
 Identities = 437/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaggtgaaacaggtaccctgggatgtaaatcctagaacattcctgaggaattctgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaggtgaaacaggtaccctgggatgtaaatcctagaacattcctgaggaattctgtgt 260

                                                                       
Query: 61  aactcctgatgttagacagcagaaattgagaatgatcaaaggacagagaaacctttctac 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aactcctgatgttagacagcagaaattgagagtgatcaaaggacagagaaacctttctac 320

                                                                       
Query: 121 actgagacactttcgacgcggcaggaggaatgggttctggtaaaggcaaatgttccttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgagacactttcgacgcggcaggaggaatgggttctggtaaaggcaaatgttccttta 380

                                                                       
Query: 181 tcaaatactatcttgcattgtctttatggctttcagtgagacatattactgttgttgaat 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tcaaatactatcttgcattgtctttatggctttcagtgagacacattactgttgttgaat 440

                                                                       
Query: 241 gtattccttcaacgggcctgtgagattagtggaaataaagcaagggcagcttttgaatga 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 gtattccttcaacgggcctgtgagattagtggaaataaaacaagggcagcttttgaatga 500

                                                                       
Query: 301 gaatatatcacactgagaggaagtgagctctctcatctcctgggctggagacagcattga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatatatcacactgagaggaagtgagctctctcatctcctgggctggagacagcattga 560

                                                                       
Query: 361 agcaggctttcaattcataggcttgtgaccttagtttccaattcatacttctcccggtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcaggctttcaattcataggcttgtgaccttagtttccaattcatacttctcccggtct 620

                               
Query: 421 ttgtacttcttaggaatctt 440
           ||||||||||||||||||||
Sbjct: 621 ttgtacttcttaggaatctt 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)