Query= MSMg01no147_k22.b1 MSMg01no147_k22.b1 CHROMAT_FILE:
MSMg01no147_k22.b1 PHD_FILE: MSMg01no147_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:20 2005
(420 letters)
>mm_chr6_63051119_63051940
Length = 822
Score = 772 bits (399), Expect = 0.0
Identities = 414/419 (98%), Gaps = 2/419 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagtcgatctatcaagagtaacattaaagaaagctgacttttcc-tctgacatc 62
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcagtcgatctatcaagagtaacattaaagaaagctgacttttccctctgacatc 263
Query: 63 atctattaagtggcagaagaaaacctaagacaaacttggaacagaaaaacaattaagatt 122
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 atctattaagtgtcagaagaaaacctaagacagacttggaacagaaaaacaattaagatt 323
Query: 123 gtttttttt-ccacttctctttatctctccctttccaattttgactggtttaaaagttaa 181
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtttttttttccacttctctttatctctccctttccaattttgactggtttaaaagttaa 383
Query: 182 agaacgaatttttataaattctaaccaaagagaacacatggaaggactcatggctccagc 241
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 agaacgaatttttataaattctaaccaaagagaacacatggaaggacccatggctccagc 443
Query: 242 tgtatatgtaacaaagaatggccttatctggcatcaatgggaggtgagggccttgttcct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtatatgtaacaaagaatggccttatctggcatcaatgggaggtgagggccttgttcct 503
Query: 302 gtaaaggcttgctggcccagcatagggggatgctagggtggtgaagcagaagtggatggg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaaaggcttgctggcccagcatagggggatgctagggtggtgaagcagaagtggatggg 563
Query: 362 aaggtgggggagcaccctcacagaagaagggggaggggaagagataggagggttgcaga 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaggtgggggagcaccctcacagaagaagggggaggggaagagataggagggttgcaga 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 822
Length adjustment: 9
Effective length of query: 411
Effective length of database: 813
Effective search space: 334143
Effective search space used: 334143
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_k22.g1 MSMg01no147_k22.g1 CHROMAT_FILE:
MSMg01no147_k22.g1 PHD_FILE: MSMg01no147_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:20 2005
(632 letters)
>mm_chr6_63146163_63147195
Length = 1033
Score = 1116 bits (577), Expect = 0.0
Identities = 595/601 (99%), Gaps = 1/601 (0%)
Strand = Plus / Minus
Query: 1 tttcc-atattgagcctgtgaataatattattttgtttgtttttattttgctgttttctt 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttccaatattgagcctgtgaataatattattttgtttgtttttattttgctgttttctt 542
Query: 60 ctttatatttttgccgagaaaggataccaaacatagtcttagaatatcttctatataaga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctttatatttttgccgagaaaggataccaaacatagtcttagaatatcttctatataaga 482
Query: 120 aatcaaagaataatccaagaacacatagagggtataaataacaattagaatagaatcatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatcaaagaataatccaagaacacatagagggtataaataacaattagaatagaatcatt 422
Query: 180 agaggaatagtagtaattagaataccaaaataagtaatcactacaaaactgggttataat 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 421 agaggaatagtagtaattagaataccaaaatgagtaatcactacaaaactgggttataat 362
Query: 240 tcactaactggtattgaagtccatcaacccagtgaggaatactaaatatagaagtgtgta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcactaactggtattgaagtccatcaacccagtgaggaatactaaatatagaagtgtgta 302
Query: 300 aataattaagggggcactttttcaagaataaatggtcaatagattcccagaaagtttaga 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 301 aataattaagggggcactttttcaagaataaatggtcaatagatttttagaaagtttaga 242
Query: 360 aaaatctataagcaatctgaacaaaagtatctatagatacctttttgcaagtctagcaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaatctataagcaatctgaacaaaagtatctatagatacctttttgcaagtctagcaat 182
Query: 420 tgaactatggactttgccctaggcaagactttatccctgagctacatagccattccttta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaactatggactttgccctaggcaagactttatccctgagctacatagccattccttta 122
Query: 480 agcatttaagttttgaaaagagcctccttaaatttcttaggatggccaaaaattcacaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcatttaagttttgaaaagagcctccttaaatttcttaggatggccaaaaattcacaaa 62
Query: 540 gaagctaaggcttgtaattgctagaactgcctgtgttgcagtcttcctgccttagcctct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 gaagctaaggcttgtaattgctagaactgcctgtgttgcagtcttcctgccttagtctct 2
Query: 600 t 600
|
Sbjct: 1 t 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space: 636306
Effective search space used: 636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
