CCCNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTATAAGCAAGGCGATTACTAATGTAACTCTTTACTTT
AAAAAGGAAAGACATAAAATATCCCTTTGGAATTTTTTCAGTAATATACA
TGATTTTACATTAGGATAAATATATTTAAAAACCATTTTTCTTCTTTCAG
AGAATGTTGTTAACACAGCACAAGATTAGATTACCAAAAATTATGCAATC
AAATTTTTATCACTTGAAGTAATTGCAGGGGTCAGCACATCTGGAGTTCA
TTGGATAAGCCTTGCCCTGGTCAAAGCACCTTTGTAATGATGGTATCTCT
CCGCCTAGGTATTAAAAACCAATTTTTACGTCAGCAGTAATTTTCATTTC
CAGAGCATTTAGTAATTTGTAAATTATAACCAAGTATTGATCATTTTAAA
TATGCTAAGAAGTAGGCATGTAAATCTCATTATCTTAATTTTACAAGTGA
GAAATTAAAAATCAGGTATTTGCACAAATACAAACTAAAATTACTAATTT
TAATAGTCAAATTAAATTATGGGAAGTTTGATTTAAATAGTCATTGACAT
ATGTCTCAATCATATGATAGGCAAGTTTGGGATGTTTCAAGTATAGAAAA
AAATGCATACAAACAGCTGTCTAATAAAGAATGCCAATATCACAGAACTA
AACCATGTGACGACTGGTTGTTACACTTCAN

NCCCCACAAGACATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCTCTTTCATCCCCCAT
CCTCACCCTTTTATGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
CTGTATCACCCNCCCTCCCTCCCTCCACCCTCACCAACCCAAACCCAAAA
CCACCACCCAACTCCCCAAAACATCCCCAAACCCCCCCAACCCACACCCC
CCTCCCCCCCCCCCCAAACCCACCATTACTTCCCTTTCACCCCCCCCCAA
TAAACAACACAATACACCCCTCCACCTTATAAACCCCCCCACAAAACCCC
AAACACCCCAAACCCACTCCCCCACCCAAACCCACCACCCTCCCACCCCC
CCCCTTTCTTTAACCCACAACCCCCCCCCCCCCCTTTCCCCCCCCCCACC
CCACAAACCCCCACCCCACTCCCCCCATTAAACACACAAAACCCAACCAA
AACCCACCCCCCCCATCTACCCCAACCCACCCCAAACAACCCACACCTCC
ATCCCACCCCACAACATAATACCCAACCACCCACATCAAAAAAAACATCC
CACAACCTCACCCCCCCTTACAACAAATAACAAACACTCACCCACCCACA
CCCCTTACACCACATTCCATACACACCCCCAAAAAACCAACACCCCCCCA
CCCACAACTTCCACCACCCCACTATAAATTCCCCTCCCATCCCACCCCCC
CACACATCCAACCCACACCCTAA

Query= MSMg01no147_l06.b1 MSMg01no147_l06.b1 CHROMAT_FILE:
MSMg01no147_l06.b1 PHD_FILE: MSMg01no147_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:21 2005
         (666 letters)



>mm_chr6_76149766_76150829
          Length = 1064

 Score = 1216 bits (629), Expect = 0.0
 Identities = 654/663 (98%), Gaps = 3/663 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctataagcaaggcgattactaatgtaactctttactttaaaaaggaaagacataa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctataagcaaggtgattactaatgtaactctttactttaaaaaggaaagacataa 264

                                                                       
Query: 65  aatatccctttggaattttttcagtaatatacatgattttacattaggataaatatattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatatccctttggaattttttcagtaatatacatgattttacattaggataaatatattt 324

                                                                       
Query: 125 aaaaaccatttttcttctttcagagaatgttgttaacacagcacaagattagattaccaa 184
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 325 aaaaaccatttttcttctttcagagaatgttgttaaca--gcacaagattagattaccaa 382

                                                                       
Query: 185 aaattatgcaatcaaatttttatcacttgaagtaattgcaggggtcagcacatctggagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaattatgcaatcaaatttttatcacttgaagtaattgcaggggtcagcacatctggagt 442

                                                                       
Query: 245 tcattggataagccttgccctggtcaaagcacctttgtaatgatggtatctctccgccta 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 443 tcattggataagccttgccctggtaaaagcacctttgtaatgatggtatctctccgccta 502

                                                                       
Query: 305 ggtattaaaaaccaatttttacgtcagcagtaattttcatttccagagcatttagtaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggtattaaaaaccaatttttacgtcagcagtaattttcatttccagagcatttagtaatt 562

                                                                       
Query: 365 tgtaaattataaccaagtattgatcattttaaatatgctaagaagtaggcatgtaaatct 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgtaaattataatcaagtattgatcattttaaatatgctaagaagtaggcatgtaaatct 622

                                                                       
Query: 425 cattatcttaattttacaagtgagaaattaaaaatcaggtatttgcacaaatacaaacta 484
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 623 cattatcttaattttacaagtgagaaattaaaaatcaggcatttgcacaaatacaaacta 682

                                                                       
Query: 485 -aaattactaattttaatagtcaaattaaattatgggaagtttgatttaaatagtcattg 543
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caaattactaattttaatagtcaaattaaattatgggaagtttgatttaaatagtcattg 742

                                                                       
Query: 544 acatatgtctcaatcatatgataggcaagtttgggatgtttcaagtatagaaaaaaatgc 603
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 743 acatatgtctcaatcatatgataggcaaggttgggatgtttcaagtatagaaaaaaatgc 802

                                                                       
Query: 604 atacaaacagctgtctaataaagaatgccaatatcacagaactaaaccatgtgacgactg 663
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 803 atacaaacagctgtctaataaaggatgccaatatcacagaactaaaccatgtgacgactg 862

              
Query: 664 gtt 666
           |||
Sbjct: 863 gtt 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1064
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1054
Effective search space:   691424
Effective search space used:   691424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)