BAC Information

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BAC

Clone NameMSMg01-147P07
Chromosome6 (Build37)
Map Location 89,119,238 - 89,119,717
singlet/doubletsinglet
Overlap genenone
Upstream geneGata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965
Downstream geneLOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147P07.T7 (MSMg01no147_p07.b1)MSMg01-147P07.TJ (MSMg01no147_p07.g1)
ACCAG351096AG351097
length693859
length of high quality
(start - end)
504 (47 - 550)---
definitionCHROMAT_FILE: MSMg01no147_p07.b1 PHD_FILE: MSMg01no147_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:42 2005CHROMAT_FILE: MSMg01no147_p07.g1 PHD_FILE: MSMg01no147_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCC
GCGGAATTCACTTTGCCACTCAGACTGAGTTTGGACTAAAGATCCATCTG
CCTGTATCTCCCCAATGCTGGGATTAAAGTCCTTACCCACCCTGTCCTGC
CTTACATACTTTTTTTTTTTTTAGGATTCACCTGAAACATGTTTGGTGTC
TCAACATTTTACACTTTTTCAAAACTCACATCAGAGATCCCAGCAAGCCT
ACATGTAATCTATATGTAAGGCTGTGTAAGTACAGGGACGATGGAAGCTT
CTGTCCTCTGCCTGCTACCTTTGTCCTTTTGACCTAAGCTAGCCAAGCAG
CCTATCAGGTACAACTCAGGTGTAACCATCTCCATTGAGTGATTGACTCT
TGGTGTCCCAGGCCACCACCCCCCATGCATCTTGAGGCTATAAAAGGTTA
CACAGCAGCCTTTTGTTTGCAGACTGCGGTAGACACAGCTTCTAGTTCAA
GGTAGGAGTCAGGGCAAGCCCTCTCAAAGAATAGTCCAGAGACTTTATAG
AAGTTTTCTCATCAGCATGTTGTGAGGAAGGCCAATCCAGGATAATGAGT
CCCTCCAGACACACAGCCTGTTTGCTAATCTAGGAAGGTCCTTTCCCAGT
CTGTGGAGGTAGGCTCCCTTTAGGGCAGTCTTTGCCTGCGCTG
AATGATTNTGNNTANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXGTGTAGGGTGGGGGGTGTGTGGGGGGGGG
GGGGGGGGGGANNANATCNANANANANANANANANANAGAGAGAGAGAGA
AANANACANANAANANATGTANCTTTATGTGGGTGATACAGGTGGGTTCA
TTCAAAATNTNNGNTCCCCCCCCTTGCANTTNAAATTGAAAAATTAAGAA
TTTTTGGAGGGGGCTCTACCCAACCAAANNNTTTTATTACCCAAGGGTTT
TAAGGAAGGGGTGGGGTTTGGGGGGGGGGGGGGGGGGTGGAATTTTCGGN
NNNTNNNNNNNNNTTNNNNTNNNNNNNTTTNNNNTTTNNNNNTTNNNNNN
TTTTNNNNNNNTTTTTTTTTTTCCCCCCCCCCCNNAACCCCCCCCCCCCC
CAAAAAAAAACACTCAAACAAATAAAAAAAAACNCTNNACCCTTTTTTTC
CCCCCCCCCAAAAAACATTNTTTATAAAACATTCTTTTTTAAAAATAAAC
CCCTTTTTCNNCAATCNCNAAAAATAAACATACCCCCCCNANANTTTTTC
TCCCTTTTTTTTTAAAAAAAACACACCTTTCTCCTTCCCACCCCACNCCA
CCACTCAAACCCTCTCCTCCCTCAATATCCACCATCACCATTTTTTTTGT
TTGTGTGTTTTANNCCTAANNNNAAANAAATTTNNNNNNANNATNTNATT
TTTTNTTCNNNNNCNNACCCCCNTTCACCTTCTTTTTCCTTTTTTTTTTA
CCCCCCAAATACCTTTTTTTNCTCTTTTTTAAATTCTTTTTTTTTGTTGG
TGTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_p07.b1 MSMg01no147_p07.b1 CHROMAT_FILE:
MSMg01no147_p07.b1 PHD_FILE: MSMg01no147_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:42 2005
         (504 letters)



>mm_chr6_89118925_89119827
          Length = 903

 Score =  801 bits (414), Expect = 0.0
 Identities = 468/498 (93%), Gaps = 21/498 (4%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattcactttgccactcagactgagtttggactaaagatccatctgcctgtatctccc 66
           ||||||||||||| || |||||||||||||||||||||||||||||              
Sbjct: 793 ggaattcactttggcaatcagactgagtttggactaaagatccatc-------------- 748

                                                                       
Query: 67  caatgctgggattaaagtccttacccaccctgtcctgccttacatac---tttttttttt 123
              ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 747 ---tgctgggattaaagtccttacccaccctgtcctgccttacatacttttttttttttt 691

                                                                       
Query: 124 tttaggattcacctgaaacatgtttggtgtctcaacattttacactttttcaaaactcac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tttaggattcacctgaaacatgtttggtgtctcaacattttacactttttcaaaactcac 631

                                                                       
Query: 184 atcagagatcccagcaagcctacatgtaatctatatgtaaggctgtgtaagtacagggac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 atcagagatcccagcaagcctacatgtaatctatatgtaaggctgtgtaagtacagggac 571

                                                                       
Query: 244 gatggaagcttctgtcctctgcctgctacctttgtccttttgacctaagctagccaagca 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 570 gatggaagcttctgtcctctgcctgctacctttggccttttgacctaagctagccaagca 511

                                                                       
Query: 304 gcctatcaggtacaactcaggtgtaaccatctccattgagtgattgactcttggtgtccc 363
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gcctagcaggtacaactcaggtgtaaccatctccattgagtgattgactcttggtgtccc 451

                                                                       
Query: 364 aggccaccaccccccatgcatcttgaggctataaaaggttacacagcagccttttgtttg 423
           ||||||  |||| |||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 450 aggcca-tacccaccatgcatcttgaggctataaaagggcacacagcagccttttgtttg 392

                                                                       
Query: 424 cagactgcggtagacacagcttctagttcaaggtaggagtcagggcaagccctctcaaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cagactgcggtagacacagcttctagttcaaggtaggagtcagggcaagccctctcaaag 332

                             
Query: 484 aatagtccagagacttta 501
           || |||||||||||||||
Sbjct: 331 aacagtccagagacttta 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space:   441142
Effective search space used:   441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)