BAC Information

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BAC

Clone NameMSMg01-148A16
Chromosome6 (Build37)6 (Build37)
Map Location 70,287,244 - 70,287,75069,930,523 - 69,931,186
singlet/doubletsingletsinglet
Overlap geneIgk
Upstream geneIgkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20
Downstream geneIgk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148A16.T7 (MSMg01no148_a16.b1)MSMg01-148A16.TJ (MSMg01no148_a16.g1)
ACCAG351155AG351156
length746738
length of high quality
(start - end)		514 (33 - 546)665 (74 - 738)
definitionCHROMAT_FILE: MSMg01no148_a16.b1 PHD_FILE: MSMg01no148_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:49 2005CHROMAT_FILE: MSMg01no148_a16.g1 PHD_FILE: MSMg01no148_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:49 2005
singlet/doubletsingletsinglet
BLAST hitpluralunique
Map location.(70,287,244 - 70,287,750)(69,930,523 - 69,931,186)
sequence
GCGGCCGCTATACGACTCCTATATCGAGAGAATCCGCGGAATTCTTCTTA
TCTACTCTCAAATTTGGAAACCCAGAAATCTCACACCATCCTAAAGAAAT
ATGATGTTGTGTTGATAGACTCTAACTTTCAGGCTTCCATCTCATATTCA
TGAGTTAATTTAATATTTTAAAGGCAAAATCCAAGGCCCCATGTAAATAA
TGCTAATTAATGCTTTATATGTATTCCTTAAAAATAAACTGATTAACTGG
TTTTGGACTTCATGGATACAGTAAGACATGACAGTATTATGGAACACATA
CAATTGTTTATGTTTTATTTGTATCTTCCTCCAGGTGTAATATCCTATCT
GATGAAGGATTAACCCTTTTTAATAATTTTCTATTGTTGTGATAAATACC
ATGAACAAACAAACTTGTAAAGAAAGGATTCCTATGGACACTCAGAGGGT
TAGACTATGAAAGCCAAAAGAAGGCAGAAGGCTCACATCTCAAACTGTAT
GTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGCCNNC
NTNCTCCTCTTCTTTTCTTCCCTCTTTTCTCTTCCCCCCCTTCTTCTCTC
CTCCTTTCCTTCCTCCTTTTTTTCCTTTTTCTTTTTCCCTTTCTCCCCTT
TTTTCCCCCCTCCTCCTCTTCTCCTCTTTTTTCCCTCTTCCCCCCTTCCT
CTCTCTTTTCTCTCTTCTTCTCTTCCTCTCTCTTTCTCCTTCTCTC

NCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATACAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGGTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGAGATTACAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGAATCCCA
CAATACCTCTTCTTGTGGCTTCTTAACTGTTTCCTCAACTTTTAAGCTGA
TTGACAGAGTGATGTCAGCTGACACAGACTCACATAGAGTTTTGCTAAGA
CAGACTCACATGGTGAGACAAGATCCATGGGGGGACACATAATGTTTGGA
GGGAGTATAAATAGGACTCAATGGACAGTGATGGGAGGCTTACAATGTGG
CTCATAGTGGCCCCGGTTATTGAACATCTAAAACAAATCATAGCCATTCA
CTGACATTTTGCATTTATATTCCACATATTTTGAAGTTCAGATTTTGTTT
TGAAAGTTTAGGTGTTCAGTTTGTAATTCTAAAAAGAAAAAAATTCACCA
CAAATTCTAAGTAAATATATTTCTAATTTTTTCATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_a16.b1 MSMg01no148_a16.b1 CHROMAT_FILE:
MSMg01no148_a16.b1 PHD_FILE: MSMg01no148_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:49 2005
         (514 letters)



>mm_chr6_70287210_70288123
          Length = 914

 Score =  957 bits (495), Expect = 0.0
 Identities = 504/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcttcttatctactctcaaatttggaaacccagaaatctcacaccatcctaaagaa 66
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 541 gaattcttcttatctactctcaaatctggaaacccagaaatctcacaccatcctaaagaa 482

                                                                       
Query: 67  atatgatgttgtgttgatagactctaactttcaggcttccatctcatattcatgagttaa 126
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 481 atatgatgttgtgttgatagactctaactttcaggcttccatctaatattcatgagttaa 422

                                                                       
Query: 127 tttaatattttaaaggcaaaatccaaggccccatgtaaataatgctaattaatgctttat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttaatattttaaaggcaaaatccaaggccccatgtaaataatgctaattaatgctttat 362

                                                                       
Query: 187 atgtattccttaaaaataaactgattaactggttttggacttcatggatacagtaagaca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgtattccttaaaaataaactgattaactggttttggacttcatggatacagtaagaca 302

                                                                       
Query: 247 tgacagtattatggaacacatacaattgtttatgttttatttgtatcttcctccaggtgt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgacagtattatggaacacatacaattgtttatgttttatttgtatcttcctccaggtgt 242

                                                                       
Query: 307 aatatcctatctgatgaaggattaaccctttttaataattttctattgttgtgataaata 366
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatatcctatctgctgaaggattaaccctttttaataattttctattgttgtgataaata 182

                                                                       
Query: 367 ccatgaacaaacaaacttgtaaagaaaggattcctatggacactcagagggttagactat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccatgaacaaacaaacttgtaaagaaaggattcctatggacactcagagggttagactat 122

                                                                       
Query: 427 gaaagccaaaagaaggcagaaggctcacatctcaaactgtatgtatgtatgtatgtatgt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaagccaaaagaaggcagaaggctcacatctcaaactgtatgtatgtatgtatgtatgt 62

                                      
Query: 487 atgtatgtatgtatgtatgtatgtatg 513
           |||||||||||||||||||||||||||
Sbjct: 61  atgtatgtatgtatgtatgtatgtatg 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no148_a16.g1 MSMg01no148_a16.g1 CHROMAT_FILE:
MSMg01no148_a16.g1 PHD_FILE: MSMg01no148_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:49 2005
         (665 letters)



>mm_chr6_69930323_69931387
          Length = 1065

 Score = 1222 bits (632), Expect = 0.0
 Identities = 656/664 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatc 260

                                                                       
Query: 61  atcagggaaatacaaatcaaaacaaccctgagattccacctcacaccagtcagaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagggaaatacaaatcaaaacaaccctgagattccacctcacaccagtcagaatggct 320

                                                                       
Query: 121 aagatcaaaaattcaggtgacagcagatggtggcgaggatgtggagaaagaggaacactc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 aagatcaaaaattcaggtgacagcagatggtggcaaggatgtggagaaagaggaacactc 380

                                                                       
Query: 181 ctccattgttggtgagattacaagcttgtacaaccactctggaaatcagtctggcggttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccattgttggtgagattacaagcttgtacaaccactctggaaatcagtctggcggttc 440

                                                                       
Query: 241 ctcagaaaattggacatagtactaccggagaatcccacaatacctcttcttgtggcttct 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagaaaactggacatagtactaccggagaatcccacaatacctcttcttgtggcttct 500

                                                                       
Query: 301 taactgtttcctcaacttttaagctgattgacagagtgatgtcagctgacacagactcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taactgtttcctcaacttttaagctgattgacagagtgatgtcagctgacacagactcac 560

                                                                       
Query: 361 atagagttttgctaagacagactcacatggtgagacaagatccatggggggacacataat 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 atagagttttgctaagacagactcacatggtgagacaaaatccatggggggacacataat 620

                                                                       
Query: 421 gtttggagggagtataaataggactcaatggacagtgatgggaggcttacaatgtggctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttggagggagtataaataggactcaatggacagtgatgggaggcttacaatgtggctc 680

                                                                       
Query: 481 atagtggccccggttattgaacatctaaaacaaatcatagccattcactgacattttgca 540
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttagtggccctggttattgaacatctaaaacaaatcatagccattcactgacattttgca 740

                                                                       
Query: 541 tttatattccacatattttgaagttcagattttgttttgaaagtttaggtgttcagtttg 600
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 741 tttatactccacatattttgaagttcagattttgttttgaaagtttaggtgttcagtctg 800

                                                                       
Query: 601 taattctaaaaagaaaaaaattcaccacaaattctaagtaaatatatttctaattttttc 660
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taattctaaaaagaaaaaaaatcaccacaaattctaagtaaatatatttctaattttttc 860

               
Query: 661 atca 664
           ||||
Sbjct: 861 atca 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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