Query= MSMg01no148_b05.b1 MSMg01no148_b05.b1 CHROMAT_FILE:
MSMg01no148_b05.b1 PHD_FILE: MSMg01no148_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:51 2005
(292 letters)
>mm_chr6_14646737_14647428
Length = 692
Score = 526 bits (272), Expect = e-154
Identities = 285/290 (98%), Gaps = 3/290 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcttggctatgcttaggcaataggagctgccattccctcatccatcctctagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttggctatgcttaggcaataggagctgccattccctcatccatcctctagg 263
Query: 64 catgccccttcttcagccttttcattgctccctttgagttattcaagcctcaactcataa 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 catgccccttcttcagccttttcattgctccctttgagttattcaagcctcaactcatga 323
Query: 124 cgagtacaatttttctcagagaaaacttttgttctcagaaactattttgttttatcatag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgagtacaatttttctcagagaaaacttttgttctcagaaactattttgttttatcatag 383
Query: 184 caaagagagaaaggagaaaaaaaa-gaagaaaaataaaagaaaaaggaaaagaaggaatg 242
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 384 caaagagagaaaggagaaaaaaaaagaagaaaaa--aaagaaaaaggaaaagaaggaatg 441
Query: 243 agaggagaggggagaggaggaatgggaaatgaaaggaaaagaaagggaag 292
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 442 agaggagaggggagaggagggatgggaaatgaaaggaaaagaaagggaag 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no148_b05.g1 MSMg01no148_b05.g1 CHROMAT_FILE:
MSMg01no148_b05.g1 PHD_FILE: MSMg01no148_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:51 2005
(629 letters)
>mm_chr6_14720198_14721227
Length = 1030
Score = 1116 bits (577), Expect = 0.0
Identities = 618/633 (97%), Gaps = 5/633 (0%)
Strand = Plus / Minus
Query: 1 tttgtttagctctgtactctacagagcagtaatgataaaaaactgtatggtattgataca 60
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 792 tttgtttagctctgtactctacagaacagtaatgat-aaaaactgtatggtattgataca 734
Query: 61 gaagcaggcagaaaaatcaaaggaatagaattgaagacccagaaatgaacccacacacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gaagcaggcagaaaaatcaaaggaatagaattgaagacccagaaatgaacccacacacct 674
Query: 121 gtggtcacttcatctttgacaaaagagtgaaaaccatccagttaaaaacaaagagcattt 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gtagtcacttcatctttgacaaaagagtgaaaaccatccagttaaaaacaaagagcattt 614
Query: 181 tcaacaaaatttcaaaaatttcaaaatgccagcactcagaactgaatcttagtagtaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tcaacaaaatttcaaaaatttcaaaatgccagcactcagaactgaatcttagtagtaatt 554
Query: 241 ttttgatgataggataattctaaaatttaaatggaattgtaaagttccaaacataaattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 553 ttttgatgataggataattctaaaatttaaatggaattgtaaagttccaaagataaattg 494
Query: 301 aaggttatgcttgagacattcttgacaatatatgaagatatcaaaatcccaaatatttgg 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaggatatgcttgagacattcttgacaatatatgaagatatcaaaatcccaaatatttgg 434
Query: 361 aattttatacttaag-aaaaacattgaaaaatgatgtagcattattgaatgggccccatt 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aattttatacttaagaaaaaacattgaaaaatgatgtagcattattgaatgggccccatt 374
Query: 420 agcacatatatttgaatgcttagtcatcaggacatgaaactccttgacaggattagaagg 479
|||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct: 373 agcacatatatttgaatgcttagtcatcgggaaatgcaactccttgacaggattagaagg 314
Query: 480 tgtggccttgttggaggaagtgtgtcacttgggtgggctttgaggtttcttttttt---a 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 313 tgtggccttgttggaggaagtgtgtcacttgggtgggctttgaggtttctttttttaaaa 254
Query: 537 aattattagatgttttcttcatttacatttcaaataatatcccctttcctagtttctgct 596
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 253 aattattagatattttcttcatttacatttcaaataatattccctttcctagtttctgct 194
Query: 597 ccaaaagtccccataccttccctctgccctgct 629
|||||||||||||||||||||| ||||||||||
Sbjct: 193 ccaaaagtccccataccttccccctgccctgct 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space: 631380
Effective search space used: 631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
