Query= MSMg01no148_j06.b1 MSMg01no148_j06.b1 CHROMAT_FILE:
MSMg01no148_j06.b1 PHD_FILE: MSMg01no148_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:31 2005
(439 letters)
>mm_chr6_148299507_148300346
Length = 840
Score = 797 bits (412), Expect = 0.0
Identities = 433/440 (98%), Gaps = 1/440 (0%)
Strand = Plus / Minus
Query: 1 agaataaatgtttagcttctaggaaaacactcttttgtttttctccccttcc-acaatgc 59
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 640 agaataaatgtttagcttctaggaaaacactcttttgtttctctccccttccaacaatgc 581
Query: 60 tggaaatgatagtcctcaatagacagcgagtccttacagtatttacccattgattagggg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tggaaatgatagtcctcaatagacagcgagtccttacagtatttacccattgattagggg 521
Query: 120 tgggattaagttggcctattctacattgataactttctgtaagtagtgtgggcttctcga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgggattaagttggcctattctacattgataactttctgtaagtagtgtgggcttctcga 461
Query: 180 gacatctgtgttggctgcagaccatgtagattaccatgtagctagggcatgttttgctca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gacatctgtgttggctgcagaccatgtagattaccatgtagctagggcatgttttgctca 401
Query: 240 gggaaacccaggctacctaatgttctgcttggcttactagtgaactcaacacatgaagcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gggaaacccaggctacctaatgttctgcttggcttactagtgaactcaacacatgaagcc 341
Query: 300 atggaagaggctttgagtttgctgtcaagtatggtgggttaggtatgcaccccttagagg 359
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 340 atggaagaggctttgagtttgctgtcaagtatggtgggttaggtatggagggcttagagg 281
Query: 360 agctctaattaaaggcacaattggaaaagttggtttggtaatggttggatgagactttct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agctctaattaaaggcacaattggaaaagttggtttggtaatggttggatgagactttct 221
Query: 420 tctctctctgccctaaatgt 439
||||||||||| ||||||||
Sbjct: 220 tctctctctgctctaaatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 840
Length adjustment: 9
Effective length of query: 430
Effective length of database: 831
Effective search space: 357330
Effective search space used: 357330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_j06.g1 MSMg01no148_j06.g1 CHROMAT_FILE:
MSMg01no148_j06.g1 PHD_FILE: MSMg01no148_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:31 2005
(567 letters)
>mm_chr6_148153173_148154139
Length = 967
Score = 1019 bits (527), Expect = 0.0
Identities = 560/577 (97%), Gaps = 10/577 (1%)
Strand = Plus / Plus
Query: 1 cattattgttaataaagccatagtggtaaatgctattagagaaactgagaaatacaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 191 cattattgttaataaagccatagtggtaaatgctattagagaaactgagaaatacgacaa 250
Query: 61 caacaaaaaaagagaattaaaacaataaaaaagtaaacagctcccc----------ccac 110
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 251 caacaaaaaaagagaattaaaacaataaaaaagtaaacagctccccaccaccaccaccac 310
Query: 111 caccaccaccaccagacagggtttctctgtgtagccctggctgtcctggaactcactttg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caccaccaccaccagacagggtttctctgtgtagccctggctgtcctggaactcactttg 370
Query: 171 tagacgaggctggcctcgaactcagaaatctgcctgcctctgcctcccaagggttgggat 230
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 371 tagacgaggctggcctcgaacttagaaatctgcctgcctctgcctcccaagggttgggat 430
Query: 231 taatggcgtgcgccaccacgcctggcttgtaaacagctatcttaagcaggactaacttaa 290
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 431 taatggcatgcgccaccacgcccggcttgtaaacagctatcttaagcaggactaacttaa 490
Query: 291 aagtatccaacatgaacattatttaaataaacaatataaatgatttaacttaaaatgcca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 491 aagtatccaacatgaacattatttaaataaacaatataaatgatttaacttaaaatgtta 550
Query: 351 tatatgttataaatcagctcagaaattaaacccaaggagcacaaacatctacacactgag 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tatatgttataaatcagctcagaaattaaacccaaggagcacaaacatctacacactgag 610
Query: 411 gaaaaactgcctgtcctcagttcaactgtcccttactagacagacttgtcacagttttac 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gaaaaactgcctgtcctcagttcaactgtcccttactagacagacttgtcacagttttac 670
Query: 471 acagtacaaggtctgtatttcttcatagcagtcacagatagagtaataaaaataagcatg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 acagtacaaggtctgtatttcttcatagcagtcacagatagagtaataaaaataagcatg 730
Query: 531 ctgatagcaccaacttacaaatggctccctcgttact 567
||||||||| |||||||||||||||||||||||||||
Sbjct: 731 ctgatagcatcaacttacaaatggctccctcgttact 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
