BAC Information

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BAC

Clone NameMSMg01-149C07
Chromosome6 (Build37)
Map Location 10,827,532 - 10,828,006
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264, LOC100040285
Downstream geneLOC667650, AA545190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149C07.T7 (MSMg01no149_c07.b1)MSMg01-149C07.TJ (MSMg01no149_c07.g1)
ACCAG351945AG351946
length719785
length of high quality
(start - end)
474 (72 - 545)---
definitionCHROMAT_FILE: MSMg01no149_c07.b1 PHD_FILE: MSMg01no149_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:18 2005CHROMAT_FILE: MSMg01no149_c07.g1 PHD_FILE: MSMg01no149_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAAGCCG
CGGAATTCTTTCAGCTGTCTTCTTTTAATCCAAATTTATAAGCAAGACAT
TTATTACATGGAGTTTGATCTTTCATTGTGAATACAGTTTCTATAAAAGA
AAGGCAGACAATTTCTATCTGAAAAAAACTTTAAAGTACATTGTACATTA
AAAAATCACTGAAGCATTCTCGCCTAAGCTGTTCATGCACTAGGTTTCAA
TGGTTTCCAAAATTATCAGTAAATTTAAGAGTCATTCTAATTTTCTCAGT
CATTATTTTAAACTCCAGTAGGACAGATAACAAATCTAATTGGTCAGTGA
GGCATAAAACATTCAGGTCAAGTAGATCAGAACAAAACTGTTTCCTGATT
CTTTGTGATCTCCCTTCATGGATGCCCTGTTCCATGACGACTAACTCTGC
TTCACTTCTAAAGTATTTTTGTAAAAATAACTTTTATTAGCCTGATGTAA
TTGTCATCGTGGAGGCATACTGCCTCAGTCTGCTAACCTAGGCCTAGACC
GGGAATCTCTAGCCTTAATAAAATCTAATCTAGGTATCTAGACCTAGAAT
GGTTCCAGCCTCTCCGACTTGCAGCTGAATAAGCTCACCCTTTCTAGTTC
TTTCTGAACTCTGTCTGATTCAATTCCCACTTTGTCTCAAACTTTTCTCC
AAACTTATTCACTCTAGTC
TATAGTGAGTAGCCTGGCGNCCGCCTGNCCGTCGTCATTAGGTGACCTAT
ANAAGGATTTGCTNNAATTCCAGCNCAGCCAGGGCTACACAGAGAAACCC
TGTCTCGAANAANTCNNTCNNCTCCANTCACCCCNACAAAAAAGTTGCAT
TTGTGNNNAGAGTGTGGGGNACTTTTGGNATAGCATTGGNAATGTAAATG
AGGAAAATTCCTAATTNNNNTNNNTNNANNCAGACAATCCAATACCTTTT
GGCACCTGCTCTGACAATTATCAATGTGTCTAAAATGATATTCTTGTCAG
GGCCATANTCGATTTTTACCGCAACGGGCCCGTCTTTTTTCCAAAAAAAC
TGTTCTCCCCCCTCTTTTCTTTTAACCCTTCTGTTTCCCNATATCCCCCC
CCTTTTCCTTTTTTTTATTTCCCTCCCCCCTTTGNTTCTCTTTTTTTTTT
TTCCCCCCCCCCTTTTCCTTCNNCCCCTTTTTCTTTCCTTTTTTTTTTCT
TTTTTCCCTCTTTTCCCTTCCCTCCCCCCTTTCTTCTTTTTTCTTTCTCC
TTCTCTTTCTCTCTCCTTTTCCTTCCCACTAAAGTAAAAGAAATAGCATC
CTTNCTTNCCCNCCCCCCCNCCAACAAAAAAAAAGAAAAAAAAAAAACTA
CGGCCCCAACCGNCTCTTTNCCNCTCCTTTTTAAAAAAAAAGAAAAACCC
TCCCTTNNNNCNNTTTTTTTCCCCCCCCTCCTTATTTTTTCTCTCAAAAA
GAAAAAAAAAAACTAAAGCAGCTCTCCCTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_c07.b1 MSMg01no149_c07.b1 CHROMAT_FILE:
MSMg01no149_c07.b1 PHD_FILE: MSMg01no149_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:18 2005
         (474 letters)



>mm_chr6_10827408_10828282
          Length = 875

 Score =  888 bits (459), Expect = 0.0
 Identities = 471/475 (99%), Gaps = 1/475 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttaatccaaatttataagcaagacatttattacatggagtttgatctttcattgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cttttaatccaaatttataagcaagacatttattacatggagtttgatctttcattgtga 540

                                                                       
Query: 61  atacagtttctataaaagaaaggcagacaatttctatctgaaaaaaa-ctttaaagtaca 119
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 539 atacattttctataaaagaaaggcagacaatttctatctgaaaaaaatctttaaagtaca 480

                                                                       
Query: 120 ttgtacattaaaaaatcactgaagcattctcgcctaagctgttcatgcactaggtttcaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttgtacattaaaaaatcactgaagcattctcgcctaagctgttcatgcactaggtttcaa 420

                                                                       
Query: 180 tggtttccaaaattatcagtaaatttaagagtcattctaattttctcagtcattatttta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tggtttccaaaattatcagtaaatttaagagtcattctaattttctcagtcattatttta 360

                                                                       
Query: 240 aactccagtaggacagataacaaatctaattggtcagtgaggcataaaacattcaggtca 299
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aactccagtaggacagagaacaaatctaattggtcagtgaggcataaaacattcaggtca 300

                                                                       
Query: 300 agtagatcagaacaaaactgtttcctgattctttgtgatctcccttcatggatgccctgt 359
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 299 agtagatcagaacaaaactgtttcctgattctttgtgttctcccttcatggatgccctgt 240

                                                                       
Query: 360 tccatgacgactaactctgcttcacttctaaagtatttttgtaaaaataacttttattag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tccatgacgactaactctgcttcacttctaaagtatttttgtaaaaataacttttattag 180

                                                                  
Query: 420 cctgatgtaattgtcatcgtggaggcatactgcctcagtctgctaacctaggcct 474
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cctgatgtaattgtcatcgtggaggcatactgcctcagtctgctaacctaggcct 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 875
Length adjustment: 10
Effective length of query: 464
Effective length of database: 865
Effective search space:   401360
Effective search space used:   401360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)