BAC Information

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BAC

Clone NameMSMg01-149L01
Chromosome6 (Build37)
Map Location 50,254,311 - 50,254,691
singlet/doubletsinglet
Overlap geneOsbpl3
Upstream geneCcdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681
Downstream geneCycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149L01.T7 (MSMg01no149_l01.b1)MSMg01-149L01.TJ (MSMg01no149_l01.g1)
ACCAG352340AG352341
length689696
length of high quality
(start - end)
420 (65 - 484)384 (72 - 455)
definitionCHROMAT_FILE: MSMg01no149_l01.b1 PHD_FILE: MSMg01no149_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:03 2005CHROMAT_FILE: MSMg01no149_l01.g1 PHD_FILE: MSMg01no149_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCAAAATTTGCGGCGCTAAACGACTCCTATTCCAAGAGATCCGCGGAA
TTTCACCTGACCATACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACACCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACATTCCTCCATTGTTGGTGGGATT
GCAAGCTTGTACAACCACTCTAGAAATCAGTCTGAAGGTTCCTCAGAAAA
TTGGACATAGTACTACCGGAGGATCCTGCAATACCTCTCTTGGACATATA
TCCAGAAGATGTTCCAACTGGTAATAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTACTTATAAGAGCCAGAAGCTGGAAAGAACCCAGATGTCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTA
CTACTCAGCTATTACAAAGAATGAATTTATGATATTCCTAGGCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTACCCCAATCACTAAAGAAC
TCACATGATATGTACTCACTGATAAGCGGATATTCGCCCAGAAACTTAGA
TACCCCAGAATACAGATCCATTCCGCAAAACCCTTGAAC
ACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATTGGGACGACTGGATTTCCACATGCAA
AAAAAGGAAATATTTGTAATCTGATAAGTGCAAAGCACAAAATGGAACTC
AGTTGCAAGGAAACAGTGGGTGAATGGAGTGTATGGACGTGCACCCCAGT
CACACCAACCCTGGGGACTCAGGAGAGTAAGGCAGGAGGACATTGTAAGT
GCTGTATGGCAAGATCCCATCTCAGAGAAGATGCTACGGAAAGTGCAGCG
AGCCGGGCTTGAGGTTAGAAGCTTTGGTTGCAGGCCTTGAGGATCTGAAC
TTGGCATCCAGAACCCACGTGGTAGGAGAGAAGTGACCCCTGAAAGTTAC
CTTCTGACCTCCATGTGTGTGCTGTCTCACACACACACACACACACACAC
ACACACACACACCACTGTTTTCTACAAAGGCAAATAGAGCTAGAAGCACA
GCTCGGTGGCAGTGAGCCTGCCTCCCAGAAAAGGGGGAACAAAAGTACCT
TTAAAATCATCCCTAAAAGCAGACAGCCAACAGCTGAGTGGACGTTCAGT
ATCACTCGTCATGTCATTTCAGGAAATACCAAGTAAAACCTTTGCTTATA
ACAGTTGGGCCCATAATGCTGAAAGGAAATTGAAAAAATGGGAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_l01.g1 MSMg01no149_l01.g1 CHROMAT_FILE:
MSMg01no149_l01.g1 PHD_FILE: MSMg01no149_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:03 2005
         (384 letters)



>mm_chr6_50254196_50254979
          Length = 784

 Score =  677 bits (350), Expect = 0.0
 Identities = 374/382 (97%), Gaps = 1/382 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ttgggacgactggatttccacatgcaaaaaaaggaaatatttgtaatctgataagtgcaa 62
           ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  |||
Sbjct: 496 ttgggacaactggatttccacatgc-aaaaaaggaaatatttgtaatctgataagaacaa 438

                                                                       
Query: 63  agcacaaaatggaactcagttgcaaggaaacagtgggtgaatggagtgtatggacgtgca 122
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agcataaaatggaactcagttgcaaggaaacagtgggtgaatggagtgtatggacgtgca 378

                                                                       
Query: 123 ccccagtcacaccaaccctggggactcaggagagtaaggcaggaggacattgtaagtgct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccccagtcacaccaaccctggggactcaggagagtaaggcaggaggacattgtaagtgct 318

                                                                       
Query: 183 gtatggcaagatcccatctcagagaagatgctacggaaagtgcagcgagccgggcttgag 242
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 317 gtatggcaagatcccatctcagagaagatgctacggaaagtgcagcaagccgggcttgag 258

                                                                       
Query: 243 gttagaagctttggttgcaggccttgaggatctgaacttggcatccagaacccacgtggt 302
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 257 gttagaagctttggttgcaggccttcaggatctgaacttggcatccagaacccacgtggt 198

                                                                       
Query: 303 aggagagaagtgacccctgaaagttaccttctgacctccatgtgtgtgctgtctcacaca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 197 aggagagaagtgacccctgaaagttaccttctgacctccatgtgtgtgctgtcacacaca 138

                                 
Query: 363 cacacacacacacacacacaca 384
           ||||||||||||||||||||||
Sbjct: 137 cacacacacacacacacacaca 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)