ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCTGTTACTCTTTCTGTGGTGTTTTATTCATTAAACAAACCCT
TAGTTTGTATACTCAAGCTTACTATAACTTTAATTCTAGCCTCTATTTTT
CTGTGATGTCAACGTTTTAAGACATTTAGTACTTGACTCTCTGTGCCCAG
CTTATTGCATATATATATATATATATATATATATATATATTCTATTCCAG
GATCATCCATTTGGTTCTAAACAACAGGATGCTATCTTTTTTTACAGCTG
AAAATATCCCATTGTGTCCTCGTGCCACCTTCTTTTTTCTTATTCCAGCA
CTAATGGTTACTTAGGATCATTCACTGAGCTGATGTTAGTACAAGATGTA
TTAACATCCATGTAACGAAATATCACACAATACCTTGTAAATTGCACAAT
TATTATGGTTTCAAATGGACTAAAACTATTATGAGAAATTCACCCAGGAA
CTATTGTTCCTTTCAGTTTCTCATAATCATTTTAATGGATCAGACTTTCA
ACAATTTAGATGATGGTCCCTATCCTACTGCCATCATTGTTCTCTTGATG
AGAGCCTTCCTTTCTGTCACATCCCTTTGAACTACCTAAATATTGATTGA
CCTCCACATGCTTTTAAAACTCTCTAATATAATGTAAATTCC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGACAGTGAGATACTAGCTCGGGAAA
GAGTGGGTGGTGTGCTGCAGTTTTTTCTGCTTCTGTGGACATGGGCTGAT
TGGCAGAGTGGTGTCAGTTGCTTGCATAGCTAAATGGTTCTGATCTTCAC
TTCCCTGAGAGAGATACAGCAGATAACTTCTCCTGGTGCCCTTCCGGTTC
CCCCTCTGACTCATGCCAAGGCTGACGCTGAGCTACCTCTGGTAGGTAAT
GCCACTGTTGCTGATTTGTGTTAGATATCCCAACTCTACTGAACTGGACC
TCTGGTAAATTCATCAAATGCTTTTGAATGGATTAAGCTGCCACTGAAGA
CCTATAAACTGAACTGCCAATTTCCTGACAATACTTATGGGAGTTGCTCC
AAAGAACCATTTCTAAACAGGCCCTCTTCCCCATGGTAGGTGGTGAGCTA
GAAGGGAGAATAATGCTTTGAAGGACCATCATAAAATATGCATTTTGAAA
AAAATTAAAGATACATACCACATTCCCTCTCTGCTCAGTTTTCTTACTGT
ACTTGTTTAAGGCTATTGCTCATGGCTATGTTTCCTCATTACTTGTCAAT
AAAATATAAATTCCTTCAATACACAGATTTTGCCTCTGAA

Query= MSMg01no149_l17.b1 MSMg01no149_l17.b1 CHROMAT_FILE:
MSMg01no149_l17.b1 PHD_FILE: MSMg01no149_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:06 2005
         (640 letters)



>mm_chr6_75370320_75371359
          Length = 1040

 Score = 1152 bits (596), Expect = 0.0
 Identities = 625/636 (98%), Gaps = 4/636 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctgttactctttctgtggtgttttattcattaaacaaacccttagtttgta 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctggtattctttctgtggtgttttattcattaaacaaacccttagtttgta 264

                                                                       
Query: 65  tactcaagcttactataactttaattctagcctctatttttctgtgatgtcaacgtttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactcaagcttactataactttaattctagcctctatttttctgtgatgtcaacgtttta 324

                                                                       
Query: 125 agacatttagtacttgactctctgtgcccagcttattgcatatatatatatatatatata 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 agacatttagtacttgactctctgtgcccagcttattgcatatatacatatatatatata 384

                                                                       
Query: 185 tatatatatattctattccaggatcatccatttggttctaaacaacaggatgctatcttt 244
           | | | |   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttt-t---ttctattccaggatcatccatttggttctaaacaacaggatgctatcttt 440

                                                                       
Query: 245 ttttacagctgaaaatatcccattgtgtcctcgtgccaccttcttttttcttattccagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttacagctgaaaatatcccattgtgtcctcgtgccaccttcttttttcttattccagc 500

                                                                       
Query: 305 actaatggttacttaggatcattcactgagctgatgttagtacaagatgtattaacatcc 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataatggttacttaggatcattcactgagctgatgttagtacaagatgtattaacatcc 560

                                                                       
Query: 365 atgtaacgaaatatcacacaataccttgtaaattgcacaattattatggtttcaaatgga 424
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtaaggaaatatcacacaataccttgtaaattgcacaattattatggtttcaaatgga 620

                                                                       
Query: 425 ctaaaactattatgagaaattcacccaggaactattgttcctttcagtttctcataatca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaaaactattatgagaaattcacccaggaactattgttcctttcagtttctcataatca 680

                                                                       
Query: 485 ttttaatggatcagactttcaacaatttagatgatggtccctatcctactgccatcattg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttaatggatcagactttcaacaatttagatgatggtccctatcctactgccatcattg 740

                                                                       
Query: 545 ttctcttgatgagagccttcctttctgtcacatccctttgaactacctaaatattgattg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttctcttgatgagagccttcctttctgtcacatccctttgaactacctaaatattgattg 800

                                               
Query: 605 acctccacatgcttttaaaactctctaatataatgt 640
           ||||||||||||||||||||||||||||||||||||
Sbjct: 801 acctccacatgcttttaaaactctctaatataatgt 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)