BAC Information

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BAC

Clone NameMSMg01-150A12
Chromosome6 (Build37)
Map Location 92,772,135 - 92,772,364
singlet/doubletsinglet
Overlap geneA730049H05Rik
Upstream geneC130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866
Downstream geneLOC384461, LOC100043253, LOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150A12.T7 (MSMg01no150_a12.b1)MSMg01-150A12.TJ (MSMg01no150_a12.g1)
ACCAG352584AG352585
length735742
length of high quality
(start - end)
69 (145 - 213)243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no150_a12.b1 PHD_FILE: MSMg01no150_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:29 2005CHROMAT_FILE: MSMg01no150_a12.g1 PHD_FILE: MSMg01no150_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCACCCGCACCG
CGGAATTCCCCGGATAACCCCCCACAGGGTAGATGCCAGAGGATCTCTGG
GGCATGATGGCTGTCAGCCTAGCTCCAAGTTCAGTGAAACATTGTCTGAA
AGGAAAGAGGTGGAGAGTGGTAGAAGCAGAACACTCAATATCTGTCTCTA
GCACACGTGTGCGAGCGCACGCGCACACACACACAGAAGTACACACAGGC
ACACACTCACAGGCACAGACACACACAGGCACACACACAGACACACACAC
ACACCCCGACCCCCACTCCCCGGCTTCTTTCCCCTGATACACACCCACTG
GCACACACACATATACCCCGACACACCTATACGTACACACAGGCCTACAC
TCAAGGCACACACTCACAGCCCCACCTGCAGACACACAGCGGCACCCACT
GACACACACACGGCCCAACAGACACCCAGAAACCCCCAGGCCCACACTCC
CAGTCACACCCCCCTGCACCCCCCCACGGCACCCCCCCACCACACCCACA
CCTATACCCAGACTCCCCCCATCGGTATCCCCCCGGCATACCCACACCGT
GCTACCCCCACCCGCGCCATACCTCCCAGGCTTACCCCCACCTCATACCC
CCCGGTCACACCCTGTCCCCCCCCCCCACCCCCCCCCTAACCCTATTTGG
CCCCCCTCCGCGTCCCACTACCCCCCCCCCCCTAG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAACTCTTCCGGAGGCCATGAACCCTCAGCCTT
GCTTTCACTGATCCTTGGGAGTCATTGACATGACTCGCCGCAGCCTGGGA
GAATGAGAAGACAGGCTACCTCCTGCTGAATCCGATCAGCTCAGCTTCAA
GAATGGAATGCTTTAAAAAGAAGTCGAACCTCTCTACTTTCAAACAAGAG
CCTTAAATCACAGCGAAGAAGTATATAAGCAGTGGGGTTCTAGGCAACCG
ACTCTAAGGACTTTAGTCTGTCAAGCTTTTGCAAGTTAAACAGGAGACTG
CTATTGGAGTCCTGGGTTCCTCTTCCCTATCTAAAACATACATCACCCAT
ATCCAAACAAAATATCACCCCCCACTCTACTGAATTCAATTCCCCCAACT
CCCTCCCATCAGCAAACCGCTTGGTATTCATTACTACCTTCATTTTCCTT
TAAGAACCGCCTGATATACGCCCAACACGGTGAAACCCCCCACCCCGCGC
CCCCCAGCTCTGATCCACCCCCCAGACCTCTTTCTTGTTCCTCTTTTACC
CGCCGTACTCCTCTTTGTCCTATATACACCTTGTCCCGCATCCCCCCACT
CCCTATTGTTACCCGCTCCTACGTCAATTGTCCCCGCCCGCTCTACCCCA
CCCACCTCCACGCCGCCCACTGATCCTCATCCCCCCCGCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_a12.g1 MSMg01no150_a12.g1 CHROMAT_FILE:
MSMg01no150_a12.g1 PHD_FILE: MSMg01no150_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:29 2005
         (243 letters)



>mm_chr6_92771935_92772577
          Length = 643

 Score =  422 bits (218), Expect = e-122
 Identities = 227/230 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccggaggccatgaaccctcagccttgctttcactgatccttgggagtcattgacatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccggaggccatgaaccctcagccttgctttcactgatccttgggagtcattgacatga 260

                                                                       
Query: 61  ctcgccgcagcctgggagaatgagaagacaggctacctcctgctgaatccgatcagctca 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaccgcagcctgggagaatgagaagacaggctacctcctgctgaatccgatcagctca 320

                                                                       
Query: 121 gcttcaagaatggaatgctttaaaaagaagtcgaacctctctactttcaaacaagagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcaagaatggaatgctttaaaaagaagtcgaacctctctactttcaaacaagagcct 380

                                                             
Query: 181 taaatcacagcgaagaagtatataagcagtggggttctaggcaaccgact 230
           ||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 381 taaatcacagcgaaggagtatataagcagtggggttctaggcaactgact 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)