BAC Information

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BAC

Clone NameMSMg01-150B03
Chromosome6 (Build37)
Map Location 41,395,374 - 41,395,980
singlet/doubletsinglet
Overlap geneLOC100040233
Upstream geneBC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551
Downstream genePrss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150B03.T7 (MSMg01no150_b03.b1)MSMg01-150B03.TJ (MSMg01no150_b03.g1)
ACCAG352612AG352613
length735729
length of high quality
(start - end)
246 (76 - 321)601 (77 - 677)
definitionCHROMAT_FILE: MSMg01no150_b03.b1 PHD_FILE: MSMg01no150_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:32 2005CHROMAT_FILE: MSMg01no150_b03.g1 PHD_FILE: MSMg01no150_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATGCGGACGGATCCGCGG
AATTCCTAAACTTGCCTAAAAAATTCAGTGAAGTAGCTGGATATAAAATT
TACTCAAACAAGTCAATGGCCTCTTCTCCACACAAAGAAAAAACAGGCTG
AGAAAGAAATCAGGGAAACAACACCCTTCTCAATAGTCACAAATATTATA
AAATACCTTGGTGTGACTCTAACTAAGGAAGTGAAAGATCTCTATGATAA
GAACTTCAAGTCTCTGAAGAAAGAAATTAAAGATCTCAGAAGATGGAAAG
ATCTCCCATGATCATGGATTGGTATTATCAACATTGTAAAAATGGCTATC
TTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAAC
TCAATTCTTCAACTAATTAGAAAGAACAATCTGCAAATTCATCTGGAATA
GCAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCT
GGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGAT
AAAAACTGCATGGTACTGGTATAACGACAGAAAAGTAGACCACTGGAATA
GAATTGAAGACCCAGAAATTAACCCACACACCTATGGTCACTTGATCTTT
GACAAGGGAGCATATACCATCCAGTGGGGGAAAAAGACAGCATTTTCAAC
AAATGGTGCTGTCACAACTGGCAGATATCATGTAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGGCAGGTGTATCCTCCAACG
ATCTTGTCATCATCATCCACGGGGAAGGCAACTAGAGTGGAGATATAAAG
GAGAATCAAATTCATCAAGATGTTGAAGGGTAGATTGCTCAATTCCATAT
CACCCTCCTACTTTTTAGTATTATTTTTTGAGTAGAACAGCATCCTCAGT
AGGCAACATAGGATTTGATGTGTGCCTGAGAAAAGGAATAGAGGACAAGT
AACGAGATGCTAGTGGTCCCACCACTCTTCAGAGTTTCAGGAAAAATAAA
AGAATTGACAAAAGAATGCATTAAGTGGGATCCAATCACATTGTAGTTGT
CCACACCATTGTTTGCTTCTCTCTACAATTCATCAATAACAATGCTTTTA
GAATCCCAGATTAGTTGCTGCTGAGGAAATTGCCTTCTGGTCTCCATTTC
AGCCTCTATCAACATTTAGCCCTGAATTCAACATTGAGATGTTATAGTGT
ATTAACAGAAACTGGTGTAACATAAAATTTGAGAGATTATAAAAGTGGAA
AATAGGATGCTGGATAAGAAATATGAACATCAGAGCTAAGGTAGCAGAGA
CAATTGTGAAGGAGGAACCCATGTTTTCTAATTAATTAGAAATCTGGACC
ATAGAAGGCATGACACTCACCAGCAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_b03.g1 MSMg01no150_b03.g1 CHROMAT_FILE:
MSMg01no150_b03.g1 PHD_FILE: MSMg01no150_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:32 2005
         (601 letters)



>mm_chr6_41395174_41396180
          Length = 1007

 Score = 1007 bits (521), Expect = 0.0
 Identities = 584/607 (96%), Gaps = 6/607 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttggcaggtgtatcctccaacgatcttgtcatcatcatccacggggaaggcaactaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttggcaggtgtatcctccaacgatcttgtcatcatcatccacggggaaggcaactaga 260

                                                                       
Query: 61  gtggagatataaaggagaatcaaattcatcaagatgttgaagggtagattgctcaattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggagatataaaggagaatcaaattcatcaagatgttgaagggtagattgctcaattcc 320

                                                                       
Query: 121 atatcaccctcctacttttt-agtattattttttgagtagaacagcatcctcagtaggca 179
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatcacccttctactttttcagtattattttttgagtagaacagcatcctcagtaggca 380

                                                                       
Query: 180 acataggatttgatgtgtgcctgagaaaaggaatagaggacaagtaacgagatgctagtg 239
           | |||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 381 aaataggatttgatgtatgcctgagaaaaggaatagaggacaagtaatgggattctagtg 440

                                                                       
Query: 240 gtcccaccactcttcagagtttcaggaaaaataaaagaattgacaaaagaatgcattaag 299
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcccaccactcttcagagtttcaggaaaaataaaagaattgacaaaagaatgcattaag 500

                                                                       
Query: 300 tgggatccaatcacattgtagttgtccacaccattgtttgcttctctctacaattcatca 359
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 tgggatctaatcacattgtagttgtccacaccattgcttgcttctctctacaattcatca 560

                                                                       
Query: 360 ataacaatgcttttagaatcccagattagttgctgctgaggaaattgccttctggtctcc 419
           |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct: 561 ataacaatgcttttggaatcccagattggttgctgctgatgaaattgccttctggcctcc 620

                                                                       
Query: 420 atttcagcctcta-tcaacatttagccctgaattcaacattgagatgttatagtgtatta 478
           ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| || 
Sbjct: 621 atttcagcctctaatcaacatttagcccttaattcaacattgacatgttatagtgtgttg 680

                                                                       
Query: 479 acagaaactggtgtaacataaaatttgagagattataaaagtggaaaataggatgctgga 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagaaactggtgtaacataaaatttgagagattataaaagtggaaaataggatgctgga 740

                                                                       
Query: 539 taagaaatatgaacatcagag----ctaaggtagcagagacaattgtgaaggaggaaccc 594
           |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 741 taagaaatatgaacatcagagagagctaaggtagcagagacaattgtgaaggaggaaccc 800

                  
Query: 595 atgtttt 601
           |||||||
Sbjct: 801 atgtttt 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1007
Length adjustment: 10
Effective length of query: 591
Effective length of database: 997
Effective search space:   589227
Effective search space used:   589227
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)