BAC Information

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BAC

Clone NameMSMg01-150B06
Chromosome6 (Build37)
Map Location 27,166,533 - 27,166,775
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041247, Grm8, 6530409C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150B06.T7 (MSMg01no150_b06.b1)MSMg01-150B06.TJ (MSMg01no150_b06.g1)
ACCAG352617AG352618
length792710
length of high quality
(start - end)
106 (184 - 289)559 (78 - 636)
definitionCHROMAT_FILE: MSMg01no150_b06.b1 PHD_FILE: MSMg01no150_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:32 2005CHROMAT_FILE: MSMg01no150_b06.g1 PHD_FILE: MSMg01no150_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATACGATCC
GCGGAATTCTCACCTTTCCCATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCTTTTTTCCCATAAAAAGCGCGGCAACCCTGA
GATTCCACCTCACACCAGNCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTAG
GNGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGCTCT
TCATAAAATTGNACATAGNACTACTCGTATTATCCAGCAATACCTCTCCT
GGGCCTATATTCCNGAAGATGCCCCTTGANNNTAAAAAGGCCTTTGTTCC
CCCATGGTCCTAGGACTCTTTTTTTCACACCTTTNNATTTTTGGCAACCA
CCCCTATCGCCCCCANCNATAAAGAAATGGAATCAAAAAAACGTTTTACC
TCTCATCCGCNCNCGAGACCATCCTCCTTTTATNTTTTAATATGGGGNNN
NNNAAAAAANNNNTTTTCCCCCCAATGGAATTTCCCTTTTTAATTTTTTT
TTCTGATATTGGGGNCCCNNNNNNNNNNATNNGGAAACCTATTTTTCTTT
TTCTCCCTCCCTTTTTTTTATCTTGAGGGNNNAANNAACCCAANCATTTT
TCTCCATATATTTTCCCCTGATGGTAAATNCACAAACTACACTCTTTTTA
ANNAAAAANACCGCGTTCCATGTTTTGCTTTTTGTGTGTTTG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCAGAAACTATATAGTGGA
AGGAGAGAACCAACTTATGCAAGCTGCCCTCTGACCTCCACACATGCTCT
ATGGTGTCTGTATGGACACATACACATACATATTTTTGAATGCAGAAAAC
TGTATGAATACTTTTAAATAAAAGTGGACACAAATGAACACAGAGATTAA
GCACCCTCACTTTACAAATGCATAGTCAATGACCCCTTGCTTAGAAGTTT
ATGAAGTTTGGACTATTTTCTTCTCTTTTTTTTCCATTTTTTTATTAGGT
ATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCC
CCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCCT
GTACTAGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTG
ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCT
CCAGGGTACTGCTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTT
CCCTTTAGTTCCTTGGGTGCTTTCTCTAGTTCCTCCATTGGGGGCCCTGC
GGTCCATTCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGGC
GTGGCATAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_b06.g1 MSMg01no150_b06.g1 CHROMAT_FILE:
MSMg01no150_b06.g1 PHD_FILE: MSMg01no150_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:32 2005
         (559 letters)



>mm_chr6_27166333_27167291
          Length = 959

 Score =  439 bits (227), Expect = e-127
 Identities = 239/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaccagaaactatatagtggaaggagagaaccaacttatgcaagctgccctctgacct 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaccagaaactacatagtggaaggagagaaccaacttatgcaagctgccctctgacct 260

                                                                       
Query: 61  ccacacatgctctatggtgtctgtatggacacatacacatacatatttttgaatgcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacacatgctctatggtgtctgtatggacacatacacatacatatttttgaatgcagaa 320

                                                                       
Query: 121 aactgtatgaatacttttaaataaaagtggacacaaatgaacacagagattaagcaccct 180
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 321 aactgtatgaatacttttaaataaaagtggacacaattgaacacagagactaagcaccct 380

                                                                       
Query: 181 cactttacaaatgcatagtcaatgaccccttgcttagaagtttatgaagtttggactatt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 cactttacaaatgcatagtcaatgaccccttgcttagaaggttatgaagtttggactatt 440

              
Query: 241 ttc 243
           |||
Sbjct: 441 ttc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)