Query= MSMg01no150_f14.b1 MSMg01no150_f14.b1 CHROMAT_FILE:
MSMg01no150_f14.b1 PHD_FILE: MSMg01no150_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:53 2005
(244 letters)
>mm_chr6_145414055_145414698
Length = 644
Score = 311 bits (161), Expect = 2e-89
Identities = 170/173 (98%)
Strand = Plus / Plus
Query: 1 gtaccactgaaccacatttcggggtctgcaaatacccctcactaactcctctctttctga 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaccacggaaccacatttcggggtctgcaaatacccctcactaactcctctctttctga 260
Query: 61 gctgacacaaggaaaatcttacatactgacaaggtcttcagagcttgtttcttgccagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gctgacacaaggaaaatcttacatactgacaaggtcttcagagcttgtttcttgccactg 320
Query: 121 tcatatgatgtttatgggccaggctcaagcagcatactgctcaacttcttttt 173
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatatgatgttcatgggccaggctcaagcagcatactgctcaacttcttttt 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no150_f14.g1 MSMg01no150_f14.g1 CHROMAT_FILE:
MSMg01no150_f14.g1 PHD_FILE: MSMg01no150_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:53 2005
(534 letters)
>mm_chr6_145565687_145566618
Length = 932
Score = 770 bits (398), Expect = 0.0
Identities = 488/538 (90%), Gaps = 36/538 (6%)
Strand = Plus / Minus
Query: 1 cagttctcagaaggaaagagtaggtacattcaagtccaaccatatctcaacacatacaca 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 900 cagttctcagaaggaaagagtaagtacattcaagtccaaccatatctcaacacat----- 846
Query: 61 cacacacacacacacacacacacacgagagcgtgagagagagccgcttgttccgctctga 120
|||||||||||| |||||||||| ||||||||||||||||
Sbjct: 845 ---------------acacacacacga------gagagagagcagcttgttccgctctga 807
Query: 121 actctctagtgacaatcctcttgtctcagcctctcaagttctagaattagaaatgtaagc 180
|||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 806 actctctagtgataatcctcttgccccagcctctcaagttctagaattagaaatgtaagc 747
Query: 181 catcacatgaggctaaccatactcttcagtaggagttcgccccagggtataaatgtttgc 240
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 746 catcacatgaggctaaccatactcttcagtaggagttcaccccagagtataaatgtttgc 687
Query: 241 cacttttcaaaatattaaagtttaagacttccacaccatgcaatgtcaacaattagctca 300
|||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct: 686 cacttttcaaaatattaaagtttaagacttgcacaccatacaatgtcgacaattagctca 627
Query: 301 tcatggacagtcacagtaattctctgggaaataatctatgtggcccc----aatagtggc 356
||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 626 tcatggacagtcacagtaattctctggaaaataatctatgtgg----ttttaatagtggc 571
Query: 357 ctgtctaaaggataagatatactctaataagaaaagacagaataggtcccagggtaccca 416
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 570 ctgtctaaaggataagatatactctaataa-aaaagacagaataggtcccagggtaccca 512
Query: 417 gtcctagcctgggtagtcactgtgttttttatctgcccatctagaaaaatcttgctttct 476
| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 511 gccctagcctgggtagtcactgtgttttttatctgcccatctagaaaa-tcttgcgttct 453
Query: 477 agtttcctgccacttttctttctcttttttgttttaagataaggtcgcactatgtttc 534
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 452 agtttcctgccacttttctttctcttttttgttttaagataaggtctcactatgtttc 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 932
Length adjustment: 10
Effective length of query: 524
Effective length of database: 922
Effective search space: 483128
Effective search space used: 483128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
