BAC Information

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BAC

Clone NameMSMg01-150K20
Chromosome6 (Build37)
Map Location 7,756,555 - 7,756,799
singlet/doubletsinglet
Overlap genenone
Upstream geneDlx6as, Dlx5, Acn9, EG667500, Tac1, LOC667511, Asns
Downstream geneEG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150K20.T7 (MSMg01no150_k20.b1)MSMg01-150K20.TJ (MSMg01no150_k20.g1)
ACCAG353047AG353048
length748748
length of high quality
(start - end)
240 (78 - 317)500 (76 - 575)
definitionCHROMAT_FILE: MSMg01no150_k20.b1 PHD_FILE: MSMg01no150_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:18 2005CHROMAT_FILE: MSMg01no150_k20.g1 PHD_FILE: MSMg01no150_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXNCTTGCCGACGAGCCGCGGAATT
CATGCATATTTACCCCACTCGCCCAGGGTGGGGTTGGCTGCCACCAGAAC
CAGCTTGGTGACAGAGGGTTGGAATCCCCCTCCTCTCCCCCCTACTTCTC
CCTGGGAGGAACAGGAGCTACTGATCTAGTTCATCAACAAGGGACAGCAA
CTTGATCTTTCATGTCTGTCTAATGACGCCTCCATAGCATCTACAAAGAA
TGGCTTTCAGAAGGCTTATAGGCTCATGAACACACTGAGGAGCCAGAGGT
TAGCACAACCAAAGGGCAAGATTTTGTCTCACTTCTCCACATCAGGCCCT
ATGTGGTTTTTCCATTTGGTACTTCCTGAGTTGAACCCTTTATAATAAAA
TGGTGATTCTAACACGCCCCCCCGAGGTCTGTGGACTAGTCTAGAAGGTT
TCTCAACAGAGAAGAGAGACTTGAAGACCCCTCTCTATAGAGAAAAGCAA
CACTTAACGTTGGAATCTGAATTAACAATGAAGCCTTGTGGGTGCAAGCA
CTGTGGGGTCTGATGCTAACCCTAGGTTAAAACACCCAAATCAGGATCAA
ACCTGACTCGAATCATAACATACTCCTTCATGCGCCAATTAAAGAATTAA
AACCCCCCAACAAGCCAACCATAGCCATGTTTAACCTCCCGAGTTGCCGC
GCATTAAAAGCAGTCCCCCCAAACCTACACCTCTTATGACCCCCCCCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCACGTTCTACTTTTAGGTCACT
GCATTCATCCTGGGAGAAAGGCGGTACTCAGTAAAAGTTGCCTTTCATTT
TGTGACGACAGTAATTATTATAGTTACCATTCTGATTGAAGAAATTTATT
CTATTGTTTTCTATTCTATTTACTGAAGAAATCTATTCTATATTTTGTGT
AATGACTCCAGACAAATAGAAGTCACCTCAACAATTAAAGTAGGAAAATA
TTTTCAAATAGATATATTAGATTCTTAGAATATCTAGAAGGCCAATTCCT
AAACCAAGCCTCCAGCAATACTCAGGAGGAGACAGCCATCAAACTGGTTT
ACCTAGAGCCACAGATTGATTCTACCGCCATATCTCCAGTTAATTATGTG
CAATAAAATGTCTACAATAGAAATATTTGAACCATTAAACATACTACCAT
GGTTGTAGTCCGAGAATGGGAAAGCCACTCTCATGTTGGATATACTAGCT
GTAATTCATATGAAGTTGGACAGAAGATGCTGAAATGCTTTTGCTTGGAG
AATCTAGCACCTCTCTGGTCCCACCTCAAGTCAGTGACAAGCATCCCAGA
AGACCCTGCTCTCACTTCTGCCTTTACAGTTAGATTCTGTCTTACACTCT
GAATATGAGCTAAGGAGGAGCCCCACGATATTTAATGCCCCCTGCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_k20.g1 MSMg01no150_k20.g1 CHROMAT_FILE:
MSMg01no150_k20.g1 PHD_FILE: MSMg01no150_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:18 2005
         (500 letters)



>mm_chr6_7756135_7757034
          Length = 900

 Score =  404 bits (209), Expect = e-117
 Identities = 236/245 (96%)
 Strand = Plus / Minus

                                                                       
Query: 221 aaatattttcaaatagatatattagattcttagaatatctagaaggccaattcctaaacc 280
           ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 665 aaatattttcaaatagatatattagattcttagaaaatctagaaggcctattcctaaacc 606

                                                                       
Query: 281 aagcctccagcaatactcaggaggagacagccatcaaactggtttacctagagccacaga 340
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 605 aagcctccagcaatactcaggaggagacagccgtcaaactggtttacctagagccacaga 546

                                                                       
Query: 341 ttgattctaccgccatatctccagttaattatgtgcaataaaatgtctacaatagaaata 400
           |||| ||||  |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttgactctagggccatatccccagttaattatgtgcaataaaatgtctacaatagaaata 486

                                                                       
Query: 401 tttgaaccattaaacatactaccatggttgtagtccgagaatgggaaagccactctcatg 460
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 485 tttgaaccattaaacatactactatggttgtagtccgagaatgggatagccactctcatg 426

                
Query: 461 ttgga 465
           |||||
Sbjct: 425 ttgga 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)