BAC Information

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BAC

Clone NameMSMg01-151M17
Chromosome6 (Build37)
Map Location 81,422,700 - 81,423,102
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043390, LOC100042991
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151M17.T7 (MSMg01no151_m17.b1)MSMg01-151M17.TJ (MSMg01no151_m17.g1)
ACCAG353856AG353857
length757751
length of high quality
(start - end)
196 (70 - 265)403 (71 - 473)
definitionCHROMAT_FILE: MSMg01no151_m17.b1 PHD_FILE: MSMg01no151_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:42 2005CHROMAT_FILE: MSMg01no151_m17.g1 PHD_FILE: MSMg01no151_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAACTCCGCGGAATT
CTTTGTTTATCTCTGCGCCCCAATTTTTAATGGGGTTATTTGATTTTCTG
GAGTCCAGCTTCTTGAGTTCTTTATATATATATTAGTCCCCTATCTGATT
CAGGATTGGTAAAGATCCTTTCACATTGGTTTTTAAGATTAGGCAATACC
TTGCCAAAGGGCAATGCTGGCTTAGCTGGTGAATTTTGAGCTCCTTCTGT
CTCTGTCTCCCCAGTGCTCGGATAGAAACAAACGCTAACAAGCCACCCTC
TTGCTTTCCTTTCTTATTTTTTTATCATACAGGTTCTGCGCATAGAACTC
GGCGTTATTTGTTACGCACTTTGCCCACTCCTTTCACCCTACTTTAGTCA
TATAGGCCCCCCCCCCCTTATTCAAAAAACCGTTACGCCCCGCAGTCCCC
CCCTGCACTAACCCCCCTGCCCCCGCCCCCCAACCCCCTGTTCCCCCTTT
CTACTCCCCATTTCCCCCGTTTCCCCCCCTTCCATCCCCCCCCCGTCCCC
TTTCCCCCCTTTCCTCTTTTTTCTCCCCCTTATCTTTTTCCTACCCCCCC
CCTTCCCCCCCCTCCCCCCTTTACCCCCTCTCTTCCCATCCCCTTCCATA
TCCCCTACCCCCATTTCCTTCCCCTCTCCCCTTTCCCCCCTTTCTTCCCC
ACTCTTCCCCCTTTTTCTTTCCCTTCTTTCCCCTCCTCCCCTTCCCCCTC
CCCCTTA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGAAGGAAGCTCACGTGTCATAAGACAGAT
TGTGTGGGGGCAGAGGAAACAGATAAGACACATTAGATGGGAAGACCACA
AGGCAGGTTTTCTCCTTGAAATGAAGGTTTATTACAGTTGTCTTTGCCTA
CAGCCACAAGATAGAGACTAAAAGTGCAAGCAGGCCCCGAAGGACCTTAT
TTCCCATTTCTGTAGCAAACCTCCTCTGCCCAGGCCACACAGATATGAAA
TTAGTTTCAAAAAAATGTATTAAAAGCTTTTTCCTCTGACAAGAAACATT
TAATTAGAGGAGCACAGACGGAATGCCTGCAGCAATCCTCGCTCTAATCT
ACACAAAGGCCCCCTTTTTGATGGAAATATTTGTGTTGATTTCACAGTGA
CTTCCTGGAAAAAGTTGACATATTTCATGGTCATTTCATGGACTGGAAAA
AAAATGTGCCCGCAGTGATTTAATTATGATTCCATAATAAAATCTCGGTT
TCCAAAACGCTGTGTCTGTGTGTCCAGACGCACGCCGTCTCATGTTTTAC
GTCACTGCGCTTTACCTTCCCCGCACACCCCTTCCACCCCGACCGCTCCG
ACTCTACCCCCCTTCTCCCTTCCCACCCCGTCTGCCCCCTCCAACCGCCT
CACAGCCCTGTGCCCCCACCCCTTGTCCCCCGATCCCATACTACCCCCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_m17.g1 MSMg01no151_m17.g1 CHROMAT_FILE:
MSMg01no151_m17.g1 PHD_FILE: MSMg01no151_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:42 2005
         (403 letters)



>mm_chr6_81422500_81423302
          Length = 803

 Score =  741 bits (383), Expect = 0.0
 Identities = 398/403 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaggaagctcacgtgtcataagacagattgtgtgggggcagaggaaacagataagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaggaagctcacgtgtcataagacagattgtgtgggggcagaggaaacagataagaca 260

                                                                       
Query: 61  cattagatgggaagaccacaaggcaggttttctccttgaaatgaaggtttattacagttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattagatgggaagaccacaaggcaggttttctccttgaaatgaaggtttattacagttg 320

                                                                       
Query: 121 tctttgcctacagccacaagatagagactaaaagtgcaagcaggccccgaaggaccttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttgcctacagccacaagatagagactaaaagtgcaagcaggccccgaaggaccttat 380

                                                                       
Query: 181 ttcccatttctgtagcaaacctcctctgcccaggccacacagatatgaaattagtttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcccatttctgtagcaaacctcctctgcccaggccacacagatatgaaattagtttcaa 440

                                                                       
Query: 241 aaaaatgtattaaaagctttttcctctgacaagaaacatttaattagaggagcacagacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 aaaaatgtattaaaagctttttcctctgacaagaaacatttaattagaggagcacagaca 500

                                                                       
Query: 301 gaatgcctgcagcaatcctcgctctaatctacacaaaggccccctttttgatggaaatat 360
           ||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||
Sbjct: 501 gaatgcctgcagcaatcctcgctctaatctacacaaaggtccattttttgatggaaatat 560

                                                      
Query: 361 ttgtgttgatttcacagtgacttcctggaaaaagttgacatat 403
           ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ttgtgttgatttcacagtgacttcctggaaaaacttgacatat 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)