BAC Information

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BAC

Clone NameMSMg01-152C12
Chromosome6 (Build37)
Map Location 100,398,516 - 100,398,733
singlet/doubletsinglet
Overlap genenone
Upstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703, Rybp
Downstream geneShq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152C12.T7 (MSMg01no152_c12.b1)MSMg01-152C12.TJ (MSMg01no152_c12.g1)
ACCAG354120AG354121
length834791
length of high quality
(start - end)
70 (129 - 198)218 (179 - 396)
definitionCHROMAT_FILE: MSMg01no152_c12.b1 PHD_FILE: MSMg01no152_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:11 2005CHROMAT_FILE: MSMg01no152_c12.g1 PHD_FILE: MSMg01no152_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTATTTTCCTTTCTTCCCCCCCTTTCCTTCCTCCCCTCAACCCCCTCTG
TGTNNTCNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAACCA
GGACCGCGGAATTCCACCTGTACCTTGAATGTCTTATTCCTAACTGTTTA
AATGAGTGAGAATTGGTTATGCAGCCATCAAGTAATTCTGATGACATCCG
GCTGTGTGCTTAGAGACGTTACTATCCGATGCTCCCACAGACTCTGATTA
ACGCTTCCAAGAACTGAAGAGGCTGAAGTAGCCTTGGTTTTGTGCTGCTG
CAGAGCGTAAACGGTGCACCTGACCTCCCGCGCCTCCATGCCACACGCTA
AGAAGCGTGGAACAAGTTGTATGTTGTTGTCTGACCTTCCCCCGGACGAC
CCCCCCCTCAACCAATTGTCCTACCCCCCCCTACCTTCGAGCAACCCGAG
AACTCATCGAAGTTAATTATATTATTCCTGCTCCACTGACTCACTACTAA
AGAAGGCCGACTAATTTACCTTCCCACACCCCCCCACACCCCTTCCCCCA
TCCTTCCAACCCCCTTCGTATCCCTTTCGCTATCTCTTCCGTATTACTTT
ACCTCGCCCCCCCACCCTTACCTCCTTCCCCCCACCCACATCTGCTGCCT
CCCGCCCCTCTATGACTACCCCCCCCCTCTTTCTCCCCCCTTCACTCACT
TCCCCTCCCCTCTCTTCTCTCCCACCCCCTCTTCATTATTTTTTCTCCTT
TCCCCTTCCCCCTCTTTTTCCTCCTCCTCGAATCACACCACCCTCCTTCC
TCTCTTGTAATAACGCTTCCCACCCTATTTCCTN
TTTCCTATCCTTCCCCTTNCTTTTCATTTCACCCCTCTCCCCCCCCCAAA
AATCCTATGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACGTTGCGTGTGAGAGCTGGCTC
CCCCACTTGCAAGCTGTGGGACCCTGAGAGAGGCATTTCTTATCCTCACT
TGGGAAAAGGATGAAGATAACATGGCCTCCTGGGGGCAGCTGAGAGGGCA
AAGAAGGAGCCACATGTAATCTGCCATTGTCTATCTTCTCAGGCTCCTCC
TGGCTCTGTGTACCCGTTCATTCTTCTGATGAAAGGCTGCAATCCAGTTG
ACTACCTTTCATAGTAGCTCACCTTGTTCACCACTATTCCTGCCAACGGT
CATGTGCCCCAAGGAGTGTCTTCCTAGTGACTGTCCCTGATCAAGGATAC
CCTCTGGTCTAGCCAGCCCAGGAAGGCTCTTGGTGCTTGCACCAGCGGAG
TCGTGAAAGATGAGGTTGCTGCCTGCACCCATATGGGGACACAAACTCCA
CTTCTGCTTCGTATGCCCGATGTTGCCCATTTGCTTTACTCGCCACCTTC
TGTATTGATCCCGCTCCGACCGTTTGTATTCCCCCTCTTATTCACCTTCC
CCCTGCTTTGTTTCCCCCTTTTCCACGCCGTATTTTTTTCCCTTATGTTC
CCCCCTCTCTCTTCCCGCCCTTCCTCCATATATTCCCCACATATTCACGC
CTAGCTCACACATATAAACACGCTTGCCACGTCTTTCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_c12.g1 MSMg01no152_c12.g1 CHROMAT_FILE:
MSMg01no152_c12.g1 PHD_FILE: MSMg01no152_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:11 2005
         (218 letters)



>mm_chr6_100398316_100398933
          Length = 618

 Score =  406 bits (210), Expect = e-118
 Identities = 216/218 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggcatttcttatcctcacttgggaaaaggatgaagataacatggcctcctgggggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggcatttcttatcctcacttgggaaaaggatgaagataacatggcctcctgggggca 260

                                                                       
Query: 61  gctgagagggcaaagaaggagccacatgtaatctgccattgtctatcttctcaggctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgagagggcaaagaaggagccacatgtaatctgccattgtctatcttctcaggctcct 320

                                                                       
Query: 121 cctggctctgtgtacccgttcattcttctgatgaaaggctgcaatccagttgactacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggctctgtgtacccgttcattcttctgatgaaaggctgcaatccagttgactacctt 380

                                                 
Query: 181 tcatagtagctcaccttgttcaccactattcctgccaa 218
           ||||||||||||||||||  ||||||||||||||||||
Sbjct: 381 tcatagtagctcaccttgcacaccactattcctgccaa 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)