Query= MSMg01no152_d15.b1 MSMg01no152_d15.b1 CHROMAT_FILE:
MSMg01no152_d15.b1 PHD_FILE: MSMg01no152_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:16 2005
(565 letters)
>mm_chr6_34762449_34763414
Length = 966
Score = 1021 bits (528), Expect = 0.0
Identities = 554/566 (97%), Gaps = 7/566 (1%)
Strand = Plus / Minus
Query: 4 ggaattcccgtttttt----tccacccataagaacaaaaagaacaactatttgttgtaca 59
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 766 ggaattcccgttttttaaaa---acccgtaagaacaaaaagaacaactatttgttgtaca 710
Query: 60 tcccagaacattcttttataaacaaagggacaagatgacatgagataccccacaagagaa 119
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 709 tcccagaacattcttttataaacaaagggacatgatgacatgagataccccacaagagaa 650
Query: 120 gtttattcatcttgcttataggactgatcaaatgtaagtgtgcaagcacatgctcactac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gtttattcatcttgcttataggactgatcaaatgtaagtgtgcaagcacatgctcactac 590
Query: 180 tgaactgtcctatcattaatcttacagcaaagcctagctttgattcactgttccagaaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgaactgtcctatcattaatcttacagcaaagcctagctttgattcactgttccagaaga 530
Query: 240 agtcattaaggacatttacccagagtagatccgcagaaggtggcctccagcgtgaagctg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agtcattaaggacatttacccagagtagatccgcagaaggtggcctccagcgtgaagctg 470
Query: 300 ttcctgatgcccatcttccacattacaacccttcctgtcccctctttgcttttctgaacg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttcctgatgcccatcttccacattacaacccttcctgtcccctctttgcttttctgaacg 410
Query: 360 ttaaacttgcaagctgagaaggaaaactgagaagcagtggttaaaaatgacacatgtact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttaaacttgcaagctgagaaggaaaactgagaagcagtggttaaaaatgacacatgtact 350
Query: 420 ttttgggaagagtgtaaggaggaacaagtaggtagtctccttcccttcattattgttact 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttttgggaagagtgtaaggaggaacaagtaggtagtctccttcccttcattattgttact 290
Query: 480 cacaaataccatgatcagcttctttttctttgattttattgttacatacagatacatatt 539
| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cgcaaataccagggtcagcttctttttctttgattttattgttacatacagatacatatt 230
Query: 540 aacaaatagaggggggacatggatgg 565
||||||||||||||||||||||||||
Sbjct: 229 aacaaatagaggggggacatggatgg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 966
Length adjustment: 10
Effective length of query: 555
Effective length of database: 956
Effective search space: 530580
Effective search space used: 530580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no152_d15.g1 MSMg01no152_d15.g1 CHROMAT_FILE:
MSMg01no152_d15.g1 PHD_FILE: MSMg01no152_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:16 2005
(501 letters)
>mm_chr6_34612089_34612989
Length = 901
Score = 917 bits (474), Expect = 0.0
Identities = 492/498 (98%)
Strand = Plus / Plus
Query: 4 catttaaagtcatctcacaaaaaccccagccctgcttgctactcctcttcttgtttagtt 63
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 catttaaagttatctcataaaaaccccagccctgcttgctactcctcttcttgtttagtt 263
Query: 64 agcactcagtgaatctgatcgactttatcaaggttttgaggaatactttcctggtttata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcactcagtgaatctgatcgactttatcaaggttttgaggaatactttcctggtttata 323
Query: 124 atctgactttctgttatttctctttcttatacatgtaatttgtttgcttgttcctgatac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atctgactttctgttatttctctttcttatacatgtaatttgtttgcttgttcctgatac 383
Query: 184 aagccctggctagcctggaactcactttgtagaccaggctaacctttagctcacagagat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagccctggctagcctggaactcactttgtagaccaggctaacctttagctcacagagat 443
Query: 244 ctgcccgcctctactctcaagtgctgggattaaaggtgtaagccaccgtgtataacttca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgcccgcctctactctcaagtgctgggattaaaggtgtaagccaccgtgtataacttca 503
Query: 304 tgtgtgatttcttaagacacatgaactgttcactaactatgactgatactgtagtcttaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtgtgatttcttaagacacatgaactgttcactaactatgactgatactgtagtcttaa 563
Query: 364 gggactaaagaggatgcctctgtcgcacctaagctcattgttgggaaaaggctagtgatt 423
|||||||||||||||||||||| | ||||||||||||| |||||||||||||||| ||||
Sbjct: 564 gggactaaagaggatgcctctgcctcacctaagctcatcgttgggaaaaggctagcgatt 623
Query: 424 tcaggagtaatggatcacctaccctttcaaacaagtggctcgctcactcttctgttgctg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcaggagtaatggatcacctaccctttcaaacaagtggctcgctcactcttctgttgctg 683
Query: 484 taataaaccaaggtcaaa 501
||||||||||||||||||
Sbjct: 684 taataaaccaaggtcaaa 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
