Query= MSMg01no152_p20.b1 MSMg01no152_p20.b1 CHROMAT_FILE:
MSMg01no152_p20.b1 PHD_FILE: MSMg01no152_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:15 2005
(549 letters)
>mm_chr6_113572420_113573367
Length = 948
Score = 756 bits (391), Expect = 0.0
Identities = 409/415 (98%), Gaps = 1/415 (0%)
Strand = Plus / Minus
Query: 135 ttaatttcttctcttaagatctccacgggcttgccatatttccccttctgcctttgcttt 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 ttaatttcttctcttaagatctccacgggcttgccatatttccccttctgcctttgcttt 885
Query: 195 ttggtttttcaagacagggtttctctgggtagctccagctctcttggaactcactcttta 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 884 ttggtttttcaagacagggtttctctgggtagctccagctctcttggaactcactctgta 825
Query: 255 gaccagtctgacctccaatctcctgcctctgcctcccaagtgttgatataaaagctgagt 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gaccagtctgacctccaatctcctgcctctgcctcccaagtgttgatataaaagctgagt 765
Query: 315 accaccgctgccgggcccacctatgctattatttaaagtttttctcattgatgagtttga 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 accaccgctgccgggcccacctatgctattatttaaagtttttctcattgatgagtttga 705
Query: 375 gtctgtctctatttttaactacacatttcaaaacgtcttccagagtacaaaagcaaaact 434
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 704 gtctgtctctatttttaactacacatttcaaaatgtcttccagagtacaaaagtaaaact 645
Query: 435 ttccctccttttccatctgcattcccagaaaacagtattaccagcttttgtttcctttca 494
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 644 ttccctccttttccatctgcattcccagaaaacagtattaccagtttttgtttcctttca 585
Query: 495 cacttttttatgtttgtgaatagaattttaaaatatttctgtctttttcttttta 549
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 584 aacttttttatgtttgtgaatagaattttaaaatattt-tgtctttttcttttta 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 948
Length adjustment: 10
Effective length of query: 539
Effective length of database: 938
Effective search space: 505582
Effective search space used: 505582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no152_p20.g1 MSMg01no152_p20.g1 CHROMAT_FILE:
MSMg01no152_p20.g1 PHD_FILE: MSMg01no152_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:15 2005
(505 letters)
>mm_chr6_113413792_113414696
Length = 905
Score = 909 bits (470), Expect = 0.0
Identities = 497/506 (98%), Gaps = 2/506 (0%)
Strand = Plus / Plus
Query: 1 cttctgccctgcatgtgcatagaggtgagaataagggaatttgggctaatcatggctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 cttctgccctgcatgtgcatagaggtgagaataagggaatttgggctaatcatggctatt 260
Query: 61 tgcatagtcacatctccagtaaatcaatttacaaaggaccagggatggatggaaagacag 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatagtcatatctccagtaaatcaatttacaaaggaccagggatggatggaaagacag 320
Query: 121 caagccttatagcaccaaagagaaactccaacgggaccatggctgcttaggaactggtgc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagccttacagcaccaaagagaaactccaacgggaccatggctgcttaggaactggtgc 380
Query: 181 aggcttggctgtgagccacagacgctcagaggtgggagggtcctaggcagttccacctca 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcttggctgtgagccacagacgctcagaggtgggagggtcctaggcagttccacctca 440
Query: 241 gccctgcctggatgttcttgagagccaaggttgcatattcctctcaaagccacgccctct 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gccctgcctggatgttcttgagagtcaaggttgcatattcctctcaaagccacgccctct 500
Query: 301 ctagccctccgttgtagtcctccatctttccttataagtcttaacataaagatgttttgg 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ctagccctccgttgtagtcctccatctttccttataagtcttaagataaagatgttttgg 560
Query: 361 acatcactggcg-taagaggagtcctgaaagaaggatagagacccagggaggcaagaaac 419
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatcactgg-gctaagaggagtcctgaaagaaggatagagacccagggaggcaagaaac 619
Query: 420 tgccagagacgacgacagcacgtggactctcagggagtccagaatgaggaatgacacagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgccagagacgacgacagcacgtggactctcagggagtccagaatgaggaatgacacagg 679
Query: 480 gtactgggtacggtgagaaagcccag 505
| ||||||||||||||||||||||||
Sbjct: 680 gcactgggtacggtgagaaagcccag 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
