BAC Information

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BAC

Clone NameMSMg01-153I15
Chromosome6 (Build37)
Map Location 129,398,724 - 129,399,181
singlet/doubletsinglet
Overlap geneClec1a
Upstream geneEG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a
Downstream geneClec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153I15.T7 (MSMg01no153_i15.b1)MSMg01-153I15.TJ (MSMg01no153_i15.g1)
ACCAG355108AG355109
length711712
length of high quality
(start - end)
461 (39 - 499)639 (69 - 707)
definitionCHROMAT_FILE: MSMg01no153_i15.b1 PHD_FILE: MSMg01no153_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:56 2005CHROMAT_FILE: MSMg01no153_i15.g1 PHD_FILE: MSMg01no153_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGCAGTACGATAGATAGCTGTATCACAGATCTTAGGGGCAGCCATGAGGA
GTAGGTCTGGGGAGCCAAGGAGGGTCTTTTAGGCTCCCTGAAGTGTTTTA
GGTCTGTTCTAAATGAGATTAATGAAGAGGAGAAAGATACAGGGAGACAA
ATGATCTATCATTAGAAGTATCTCTAGGCTATGATGATGATGGGCTGAAG
GAGAATCCACAGACCTGAATGAGTCAATGTCCTATTTCATCTCTAGTCCA
GGTACTTCCTCGACTGAGGAAGAAGAGTAAGAAGGAAGAGGAGAGAGTGA
TAGATATTGAAGGGAAGGAGCTTCAAGGATTGCTTCAGGTTATCAGTGAG
GAGGCAGGCTATGTGAGTTCAAGGTTGACTGAGTACTCAGACATGCTCCA
GGTGCTGTTATCAGGGGTTGTGTAGAAGGTGTTGTCATGACCTGTAGGAA
GAATCATAGGGTGATGAATTCAGCCTGAGTCCAAGGGTCTGGAAGGTGAG
ACACCCTTGATACTGTCTAAAGACCTTATATTTGAAGAATCTGATTTCAC
GGTATGAGGTTGGCGCTAAATACTAGATTTGGGAAGATACTGGCTTCTTG
CCAATTATTTTGGGCTGCCTGCCTATGTTTCTATCTAATTTTGAATCCCC
CCTTTTACTAC
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAGTCCTTAGTCATCAGGGAAATGCAACTCA
AAACAACCCTGAGATTTCACTTTATATCAACCAGAATGACTAGGATCAAA
AGTTCAAGTGACAGCAGATGTTGGCAAGGATGTGAAAAAAGAGGAACACT
CCTCCATTGCTGGTGGGATTGCAAACTGTTACAACCACTCTGGAAATCAA
TCTGTCAGTTTCTCAGAAAATTAGAAGTAGATCTGTCTGAAGACCCAGTT
ATACCACTCTTGGATATACCAAAAAGATGCCCCACCATACCACAAGGACA
CATGCACCAGTATGTTCTTAGCAACCTTTATTTGTAATATCCAGAAGGTG
GAAACAACCCATGTTTCCCAACTGAAGAATGGATACAGAAAATGTGATTC
ATTTACACAGTGGAATACTAATCAGGTATTAAGAAGGAGGACATCATGAA
TTTTGTAGGCAAATGGGTGGAACTAGAAAATACCATCCTGAGAGGGGTAA
CCCATACCCAAAAGGTCATGCATGGTATATACTCTCTAAGAAGTGTGTAT
TAGTCAAAATGTACAGAATACCTAGGATACAACCCACAGACTGCAAGAAG
TTTAAGCAGCAGAAAGGCCCAAGTAAGGATACTTCAATCTCACTTAGAAG
GAGGGAAGATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_i15.b1 MSMg01no153_i15.b1 CHROMAT_FILE:
MSMg01no153_i15.b1 PHD_FILE: MSMg01no153_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:56 2005
         (461 letters)



>mm_chr6_129398520_129399381
          Length = 862

 Score =  808 bits (418), Expect = 0.0
 Identities = 448/458 (97%), Gaps = 1/458 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgcagtacg-atagatagctgtatcacagatcttaggggcagccatgaggag 63
           ||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 662 gaattctttgcagtaagtatagatagctgtgtcacagatcttaggggcagccatgaggag 603

                                                                       
Query: 64  taggtctggggagccaaggagggtcttttaggctccctgaagtgttttaggtctgttcta 123
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 602 taggtctggggagctaaggagggccttttaggctccctgaagtgttttaggtctgttcta 543

                                                                       
Query: 124 aatgagattaatgaagaggagaaagatacagggagacaaatgatctatcattagaagtat 183
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aatgagattaatgaagagaagaaagatacagggagacaaatgatctatcattagaagtat 483

                                                                       
Query: 184 ctctaggctatgatgatgatgggctgaaggagaatccacagacctgaatgagtcaatgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctctaggctatgatgatgatgggctgaaggagaatccacagacctgaatgagtcaatgtc 423

                                                                       
Query: 244 ctatttcatctctagtccaggtacttcctcgactgaggaagaagagtaagaaggaagagg 303
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 422 ctattttatctctagtccaggtacttcctcgactgaggaagaggagtaagaaggaagagg 363

                                                                       
Query: 304 agagagtgatagatattgaagggaaggagcttcaaggattgcttcaggttatcagtgagg 363
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggagagtgatagatattgaagggaaggagcttcaaggattgcttcaggttatcagtgagg 303

                                                                       
Query: 364 aggcaggctatgtgagttcaaggttgactgagtactcagacatgctccaggtgctgttat 423
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 302 aggcaggctatgtgagttcaaggttgactgagtactcagacatgctctaggtgctgttat 243

                                                 
Query: 424 caggggttgtgtagaaggtgttgtcatgacctgtagga 461
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caggggttgtgtagaaggtgttgtcatgacctgtagga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 862
Length adjustment: 10
Effective length of query: 451
Effective length of database: 852
Effective search space:   384252
Effective search space used:   384252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)