BAC Information

Click to search

BAC

Clone NameMSMg01-154D18
Chromosome6 (Build37)
Map Location 17,820,233 - 17,820,651
singlet/doubletsinglet
Overlap geneSt7
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
Downstream geneWnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154D18.T7 (MSMg01no154_d18.b1)MSMg01-154D18.TJ (MSMg01no154_d18.g1)
ACCAG355586AG355587
length719716
length of high quality
(start - end)
474 (71 - 544)512 (60 - 571)
definitionCHROMAT_FILE: MSMg01no154_d18.b1 PHD_FILE: MSMg01no154_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:48 2005CHROMAT_FILE: MSMg01no154_d18.g1 PHD_FILE: MSMg01no154_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCCGCTAAACGATCACTTTTCAAAAGAGATCCGCGGAATTCT
TTACTTTCCTAAGACATAAATTGTCCCAGCAATGCAGAACTACCTAATAC
AACTCCCAAGCTCCTTGCCTGTTGAGGAGTGTATCCACTTAACTTCTTGA
AATCTCCATCTAGAACTACAGTAGGCAAGTCAGACTTGACATGAGCTGTC
AGGAACTCCTGCTTTACCAGGAAACTGTTATACTTCTAGATAGCCACCTT
GTGGCTGGGCTAAGAACCTGTGAACATCTCATATTTCTTTGACCATAATC
TTTGTTGTTGTTATCTAATCTATTTAGCAACTATTTTGTAGAATAGTCGT
GAAAGCCAGTGAGATGGTTCAGAGGGTAGCCATGCTTATTGTCAAGTCTG
ACAACCTGAATTGAATCCTGGGACTCATACTGTATAAGGAGAGAACTGAC
TCTAGCAACTTGTTCTCTGACCACCACATTTGTACATGTACAGAAATGTA
TTAAAAAATTTTTCTTGAAAAAAGGTTATTTAGTGTTATGTATATTAGGC
ATTGTTTTACTAGGATTCAGTGATATACAACTTTTTGTTGTTTTGTTCCC
CTGAGACATACTTTATACAGCTCTGTACATTTGGGAACATGAGCACTGGT
CCAAGTGCTACCTAGGTTAGCATCTATCACTCTGTGTAGAATAGAGCACC
CTGTGCACAATATCAAGAT
ATGTGGGTAGCCTGGAGGCGCCTTTTCTCATCTTGAGGTGAACTATAGAA
TTTTCCACAAAATTCTCTGTTTAGATCTGTACCCTATTTTTAATTGGATT
ATTTGGTTTGTTGATCTCTAGTTTCTTGAATTTTTTTATGTACTTTGGAT
ATTTATTTGCTATCAGATGTCAAGTTAGTAAAAATATTGTTTTTTATTCT
GTAAGCTGTAGCTTTGTCAAATTGATGGTATCCTTTGCCTTATGGAAGCT
TTTCAGTTTAATGACATGCCATTTATTAATAGTTGATCTTAGTGCCTGGG
ATACCTGTGTTCTGTTCACAACGTTCTGTCTCCTGTACTGATGTGCTCAA
GGCCTCCTCACTTTCTCTGCCGTCAGGCTCAGTGTGTCTAGTTTTATGTT
GAGGGTTTTCATCCATTGGATGTGAGTTCTGTCTAGGGATATAAATATAT
GGATCTATTTGCATCTTGTACATGCAGACACCCAGTTTAATCAGCATTAT
TTATTGAAAATGTCTTCTTTTTTTTTTCCCTCCCAGGGTATATTTCTGAC
TTCTTTATCAAAAATTACGTGCCCCTAGATATGTGAACTTAGGCCTGGTT
CTTTTTGTTTCAACCAATGTGGATTTTGGATATGTGGAAAGCATTATTGG
TGTAAGTGGCGCTTTACTGTTTAGTGCTAGCAAAACCATGTAAGGTGGAG
TCTCCCGATGCCCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_d18.b1 MSMg01no154_d18.b1 CHROMAT_FILE:
MSMg01no154_d18.b1 PHD_FILE: MSMg01no154_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:48 2005
         (474 letters)



>mm_chr6_17820020_17820893
          Length = 874

 Score =  733 bits (379), Expect = 0.0
 Identities = 409/419 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcccagcaatgcagaactacctaatacaactcccaagctccttgcctgttgaggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 632 ttgtcccagcaatgcagaactacctaatacaactcccaagctccttgcctgttgaggagc 573

                                                                       
Query: 61  gtatccacttaacttcttgaaatctccatctagaactacagtaggcaagtcagacttgac 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 572 gtatccacttaacttcttgaaatctccatctagaactatagtaggcaagtcagacttgac 513

                                                                       
Query: 121 atgagctgtcaggaactcctgctttaccaggaaactgttatacttctagatagccacctt 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atgagctgtcaggaacacctgctttaccaggaaactgttatacttctagatagccacctt 453

                                                                       
Query: 181 gtggctgggctaagaacctgtgaacatctcatatttctttgaccataatctttgttgttg 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 452 gtggctgggctaagaacctgtgaacatctcatatttccttgaccataatctttgttgttg 393

                                                                       
Query: 241 ttatctaatctatttagcaactattttgtagaatagtcgtgaaagccagtgagatggttc 300
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 392 ttatcaaatctatttagcaactattttgtagaatagtcgagaaagccagtgagatggttc 333

                                                                       
Query: 301 agagggtagccatgcttattgtcaagtctgacaacctgaattgaatcctgggactcatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 332 agagggtagccatgcttattgtcaagtctgacaacctgaattgaatcctgggactcatag 273

                                                                      
Query: 361 tgtataaggagagaactgactctagcaacttgttctctgaccaccacatttgtacatgt 419
           |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 272 tgtagaaggagaaaactgactctagcaacttgttctctgaccaccacatttgtatatgt 214


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)