CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTACTTCCTCAAGCTAATATTGTCCCAGCAATGCAGAACTACCTAA
TACAACTCCCAAGCTCCTTGCCTGTTGAGGAGTGTATCCACTTAACTTCT
TGAAATCTCCATCTAGAACTACAGTAGGCAAGTCAGACTTGACATGAGCT
GTCAGGAACTCCTGCTTTACCAGGAAACTGTTATACTTCTAGATAGCCAC
CTTGTGGCTGGGCTAAGAACCTGTGAACATCTCATATTTCTTTGACCATA
ATCTTTGTTGTTGTTATCAAATCTATTTAGCAACTATTTTGTAGAATAGT
CGTGAAAGCCAGTGAGATGGTTCAGAGGGTAGCCATGCTTATTGTCAAGT
CTGACAACCTGAATTGAATCCTGGGACTCATACTGTAGAAGGAGAGAACT
GACTCTAGCAACTTGTTCTCTGACCACCACATTTGTACATGTACAGAAAT
GTAGTAAAAAATTTTTCTTGAAAAAAGGCTATTTAGTGTTATGTATATTA
GGCATTGTTTTACTAGGATTCAGTGATATACAATTTTTTGTTGTTTTGTT
CCCCAGAGACATACTTTATACAGTTCTGTACATTTGGGAACATGAGCACT
GGCCCAAGTGCAACCTAGGTTAGCATCTATCACTCTGTGGAGAATAGACT

CGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATCTGTACCCTATTTTTAA
TTGGATTATTTGGTTTGTTGATCTCTAGTTTCTTGAATTTTTTTATGTAC
TTTGGATATTTATTTGCTATCAGATGTCAAGTTAGTAAAAATATTGTTTT
TTATTCTGTAAGCTGTAGCTTTGTCAAATTGATGGTATCCTTTGCCTTAT
GGAAGCTTTTCAGTTTAATGACATGCCATTTATTAATAGTTGATCTTAGT
GCCTGGGATACCTGTGTTCTGTTCACAACGTTCTGTCTCCTGTACTGATG
TGCTCAAGGCCTCCTCACTTTCTCTGCCGTCAGGCTCAGTGTGTCTAGTT
TTATGTTGAGGGTTTTCATCCATTGGATGTGAGTTCTGTCAAGGGATATA
AATATATGGATCTATTTGCATCTTGTACATGCAGACACCCAGTTTAATCA
GCATTATTTATTGAAAATGTCTTCTTTTTTTTTTCCCTCCCAGGGTATAT
TTCTGACTTCTTTATCAAAAATTAGGTGTCCCTAGATATGTGAACTTAGG
TCTGGGTCTTTTTGTTTGAAGCAATGTGGATTTTGGAAATGTGGAAAGCA
GGAATGGTGTAAGTGGGGCTTACTGGGCAGTGCTAGCAGAAACATGGA

Query= MSMg01no154_e19.b1 MSMg01no154_e19.b1 CHROMAT_FILE:
MSMg01no154_e19.b1 PHD_FILE: MSMg01no154_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:53 2005
         (549 letters)



>mm_chr6_17819990_17820938
          Length = 949

 Score =  837 bits (433), Expect = 0.0
 Identities = 533/609 (87%), Gaps = 67/609 (11%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttac---ttcctcaagctaatattgtcccagcaatgcagaactacctaataca 61
           |||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gaattctttacttgttccttaagctaatattgtcccagcaatgcagaactacctaataca 632

                                                                       
Query: 62  actcccaagctccttgcctgttgaggagtgtatccacttaacttcttgaaatctccatct 121
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 631 actcccaagctccttgcctgttgaggagcgtatccacttaacttcttgaaatctccatct 572

                                                                       
Query: 122 agaactacagtaggcaagtcagacttgacatgagctgtcaggaactcctgctttaccagg 181
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 571 agaactatagtaggcaagtcagacttgacatgagctgtcaggaacacctgctttaccagg 512

                                                                       
Query: 182 aaactgttatacttctagatagccaccttgtggctgggctaagaacctgtgaacatctca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaactgttatacttctagatagccaccttgtggctgggctaagaacctgtgaacatctca 452

                                                                       
Query: 242 tatttctttgaccataatctttgttgttgttatcaaatctatttagcaactattttgtag 301
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tatttccttgaccataatctttgttgttgttatcaaatctatttagcaactattttgtag 392

                                                                       
Query: 302 aatagtcgtgaaagccagtgagatggttcagagggtagccatgcttattgtcaagtctga 361
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aatagtcgagaaagccagtgagatggttcagagggtagccatgcttattgtcaagtctga 332

                                                                       
Query: 362 caacctgaattgaatcctgggactcatactgtagaaggagagaactgactctagcaactt 421
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 331 caacctgaattgaatcctgggactcatagtgtagaaggagaaaactgactctagcaactt 272

                                                                       
Query: 422 gttctctgaccaccacatttgta----------------catgt---------------- 449
           |||||||||||||||||||||||                |||||                
Sbjct: 271 gttctctgaccaccacatttgtatatgtgcatgcataagcatgtgtgtgtgtgcgcacac 212

                                                                       
Query: 450 --------------------------------acagaaatgtagtaaaaaatttttcttg 477
                                           ||||||||||||||||||||||||||||
Sbjct: 211 acacacacacacacacacacacacacacacacacagaaatgtagtaaaaaatttttcttg 152

                                                                       
Query: 478 aaaaaaggctatttagtgttatgtatattaggcattgttttactaggattcagtgatata 537
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 aaaaaaggttatttagtgttatgtatattaggcattgttttactaggattcagtgatata 92

                    
Query: 538 caatttttt 546
           |||||||||
Sbjct: 91  caatttttt 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)