BAC Information

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BAC

Clone NameMSMg01-155N03
Chromosome6 (Build37)
Map Location 98,182,474 - 98,182,705
singlet/doubletsinglet
Overlap genenone
Upstream geneArl6ip5, Lmod3, Frmd4b, LOC641241, LOC100043692, Mitf
Downstream geneGm765, LOC666019, LOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155N03.T7 (MSMg01no155_n03.b1)MSMg01-155N03.TJ (MSMg01no155_n03.g1)
ACCAG356727AG356728
length731779
length of high quality
(start - end)
549 (97 - 645)239 (80 - 318)
definitionCHROMAT_FILE: MSMg01no155_n03.b1 PHD_FILE: MSMg01no155_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:48 2005CHROMAT_FILE: MSMg01no155_n03.g1 PHD_FILE: MSMg01no155_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCACGCAGGAAT
GTTTCTTACTGGCTTGCTTACCCTGGCTTGCTCAGTTTGCTTTCTTATAG
AACACAAGACTACCAGCCCAGGGATGGTACCACCCACAATGGGCCCTCCC
CCTTGATCACTAACTGAGAAAATGCCTTACAGCTGGGTCTCATGGAGGCA
TTTCCTCACCTGAAGCTCCTTTCTCTGTGATAACTACAGCCTGTGTCAAG
TTGACACACAAAACCAGCCAGTAACTACCAGCACTTTGGCAAAACTTCTT
TGGTTCATGTTAAATACATTCAGGCTCCTTTTCTGGCCGAACTGTTCAAC
TTTTAAACCATTCCACAAAATATTTTACTCATGTTTTTTTTTCTACAAAA
CTGGCTAAAACCATGGAGCAGCAACCTTTCCAGAGCCTGAGTGCTTTGAT
GTATTTGCCAAATAAATTAAGCCATTCCTTTAAAATCTACATTCATTTAA
GTCTTTTAGGACATCTTTAAAATCTAACCATATTATCCTACCCCCTTTTA
GACTCTTTTGGGTTTTATTTTTCAACTGGAAATCTCATGACTACTGTCAT
TACTGTTTGTGTTTTTATTGTTGCCTTGTCCTCTGAAATATTACCAGAGT
CAACTGTTGAATTCAGCTTACATATCCTAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACCCAATTCCAGTTTTGCATTTGTCAACTTT
GTATGGCAAAGGTTTATACTGATTCAGTCTTGAAAGTCCCTGCCCATGCT
TGATTGAGCCCAGTGTGTTAGAAACCATGGACGGACACAGATGTCATTCT
CAGGTGTAGCCTGAGGCAGAACAAAGCCTCTCACCTGAGGAGGGCAAACA
GACTAAAGTCTAGCTACTCTTGTGAACACAAGTGTGTGTGTATGTGTGTG
TGTGTGTGTGTGTGTGTGTTTTTTTTTCCGAAAAAAAAACACCACAAACC
CACCCGTTCTTTTTTGTTTACCCTATTAACCCCTTTCTTTTCCGATCAAT
TTCATTTAACTTTTTTTCTCTCATCGAATAAAAAGATCGGACTTGGACGT
TATTGTATTTAATTTGCCATTTTTTTCTCTCGTTATTCTCACCTATTTAT
CCTTCCTTCTTTTTATTATTTTATCTTTGCTCCTTATTTCGCCTTCTACC
CTCCCTAATAGTTATTCCCATCCATATGTACCGCTTTCTTTTTTATCCTT
TTTGCTTTCTTCCCCTCCCTCCTCCTTTTTTTACTATCTCCTTCGGGCTC
CGTCCCCCAATTATAGCCCCGCGCCCAACCCAACCTTTTTTTATTTTCTC
TCAAGAACCAAGCCACCACTAACACACTGGCACCTAACTCTTCCTATTCC
TTCTTCCTCCCCCCCCGCCCCCATCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_n03.g1 MSMg01no155_n03.g1 CHROMAT_FILE:
MSMg01no155_n03.g1 PHD_FILE: MSMg01no155_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:48 2005
         (239 letters)



>mm_chr6_98182274_98182912
          Length = 639

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttgcatttgtcaactttgtatggcaaaggtttatactgattcagtcttgaaagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttgcatttgtcaactttgtatggcaaaggtttatactgattcagtcttgaaagtcc 260

                                                                       
Query: 61  ctgcccatgcttgattgagcccagtgtgttagaaaccatggacggacacagatgtcattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcccatgcttgattgagcccagtgtgttagaaaccatggacggacacagatgtcattc 320

                                                                       
Query: 121 tcaggtgtagcctgaggcagaacaaagcctctcacctgaggagggcaaacagactaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggtgtagcctgaggcagaacaaagcctctcacctgaggagggcaaacagactaaagt 380

                                                               
Query: 181 ctagctactcttgtgaacacaagtgtgtgtgtatgtgtgtgtgtgtgtgtgt 232
           |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ctagctactcttgtgaacacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)