BAC Information

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BAC

Clone NameMSMg01-156I14
Chromosome6 (Build37)
Map Location 112,983,392 - 112,983,665
singlet/doubletsinglet
Overlap genenone
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397
Downstream geneThumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156I14.T7 (MSMg01no156_i14.b1)MSMg01-156I14.TJ (MSMg01no156_i14.g1)
ACCAG357251AG357252
length819905
length of high quality
(start - end)
318 (99 - 416)---
definitionCHROMAT_FILE: MSMg01no156_i14.b1 PHD_FILE: MSMg01no156_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:41 2005CHROMAT_FILE: MSMg01no156_i14.g1 PHD_FILE: MSMg01no156_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCTGTTTCCCTTTTTTTTTTTTAATCTAAAACAAAAAAANAAAAAAAA
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGACAGCTAGGATTACACACACACACACACAGAGAGAGAG
AGAGAAGAGAGAGAAGCCTAAGTAAGAATACCATGGCATTTATGCATGAA
TAGAATGTTCAAAAATAGGAAAACAAAGTTATTTGACATGTGAAATAACA
CACAGAAGAGAGCTGTGATGGATACTCACAACACTGAAGTACTAAAGGAG
GACCGGGGGAGGAAAGGGAGAAACAGCAGTGGAGAAGGCAAAAAGATTCT
TCTGAAATACTGGAAACTCCCACAACCCATGTTCTCACATGTGCAACAGA
AAATTAGCATCATTGCCTTTTTTCTTGACCCCCCCCCCATTTTAAACACT
TGGCAGTACTTCTTTTTCCCTGCGAACATAAACGCTTAATCACCCTTAAT
AATTAATGAAGGAAGCTATTAAACACTTAGTCATGTGTAGAAAATGAAAG
TCCTTGGTCTTATATGCTGCTTGCCTTAAGAATCAAAATTGGATTATTTT
AATTTGGGTTGGGGGCCTTAATCACAGGTACTCATGCATACTTATAGGCT
AACACTATTGATCTATTTCCCACCCCCTTTAAATACTTTCTTTTTGAGAC
AGATTTCACTAAATGGCTTGAGACTGGACTAAAAAGCCCTTCTTTATTTC
CGTATGGGCTTTTGAAATTATCTATCCATCATCACCTTAAACTTTCCCTT
ATAAAGTAAGGGGGCGCAC
TTTTCTTTTTTTTTTTTGTTTCATCTTTTTTNGTTTTTGTCNNNNNAAAA
CTATGATANGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTACAGTTAGAAGGGGAATGA
AGGAACTGAAGGGGCCTAGCCCAGGGTTGTCGGGTCCAAGTCAAAGGCAC
AGTTTTGAAAAATTCTTCAGGCTACAGTAAAAATGAGTGAAGGGAAAGGG
AAGAAGTAAAGCAGGAAGCAGGAAGTACAGACAAGGAAATTGAAAAGCCA
GTCCAGGTGAAAGTTGCCTTCTTACAGGCGGGAGCTACAAAAAAGAGCCA
AGTTCAAAAAATAGCAAAACATGCTACTTTTAAATGACCAGAATGACTCA
CAAATTTCGGGCCATTTCATCGTTCCCAAAACGGACCCAGGTCTTGAATT
GAAGTTGAGGTTAGGTATTGGCCCTGTAAAAAAAAAAAAAAAAAATTTCT
CTTGGGGATGTGTAACAAATAAATAACTAACACTCCACCCCTGCTTTAAC
TTGTTCTGTACCCCTCTATTGTGCTCCCTATATTTTCTATATTTAACATA
TATTTTTTATATTTATGTTATCTCTACTAATTTTTTTTTCTGCCTTCATA
TTTACTTTTTATATACTTTCTTTCTAACACCTCTATCTATTCTATATCAC
TTGTTATATTTCTATTTCCTTCTATCTCATCCGCCTTTTATATCTTCCAT
TAATATATTCATATGACATAATATTGTAGTGTGCAGACATTACGTGTATG
TATTATCTGGACTACTCGAAGCACTGAAATATGCTTGTTTTTCGCGCACC
CTCTTTTTATCTGCCTTTTATCTCTGTTATTTTGATGTCATTGCGATCTT
TACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_i14.b1 MSMg01no156_i14.b1 CHROMAT_FILE:
MSMg01no156_i14.b1 PHD_FILE: MSMg01no156_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:41 2005
         (318 letters)



>mm_chr6_112983150_112983869
          Length = 720

 Score =  499 bits (258), Expect = e-146
 Identities = 271/276 (98%), Gaps = 2/276 (0%)
 Strand = Plus / Minus

                                                                       
Query: 43  agagagagagagagaagagagagaagcctaagtaagaataccatggcatttatgcatgaa 102
           |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 516 agagagagagagaga--agagagaagcctaagtaagaatatcatggcatttatgcatgaa 459

                                                                       
Query: 103 tagaatgttcaaaaataggaaaacaaagttatttgacatgtgaaataacacacagaagag 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tagaatgttcaaaaataggaaaacaaagttatttgacatgtgaaataacacacagaagag 399

                                                                       
Query: 163 agctgtgatggatactcacaacactgaagtactaaaggaggaccgggggaggaaagggag 222
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 398 agctgtgatggatactcacaacactgaagtactaaaggaggaccgggggaggaaggggag 339

                                                                       
Query: 223 aaacagcagtggagaaggcaaaaagattcttctgaaatactggaaactcccacaacccat 282
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaacagcaatggagaaggcaaaaagattcttctgaaatactggaaactcccacaacccat 279

                                               
Query: 283 gttctcacatgtgcaacagaaaattagcatcattgc 318
           ||||||||||||||||||||||||||||||||||||
Sbjct: 278 gttctcacatgtgcaacagaaaattagcatcattgc 243


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 720
Length adjustment: 9
Effective length of query: 309
Effective length of database: 711
Effective search space:   219699
Effective search space used:   219699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)