BAC Information

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BAC

Clone NameMSMg01-156J13
Chromosome6 (Build37)
Map Location 18,293,227 - 18,293,547
singlet/doubletsinglet
Overlap genenone
Upstream geneMet, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr
Downstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156J13.T7 (MSMg01no156_j13.b1)MSMg01-156J13.TJ (MSMg01no156_j13.g1)
ACCAG357296AG357297
length738743
length of high quality
(start - end)
324 (46 - 369)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no156_j13.b1 PHD_FILE: MSMg01no156_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:46 2005CHROMAT_FILE: MSMg01no156_j13.g1 PHD_FILE: MSMg01no156_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATGTAGACCAGGCTAGACTTGAATTCACAGAGATCTGCCAGC
CTATGCTTCTGAGCGCTGGCATTAAAGATGTGTACTACTGTACCCAGCTT
CAGGTGCCCCTCTGCCAATCACATGGCCTTATTTCGTGTGTTGGTCATGG
CTCTAAAATGTCGAATTTGTTAAAGATAGCAGACCCTATTTCCTTCTTAA
CTTAATGACTTCCTTCCATCCTTATTCTCAATTGATGACCTTTATGTTAC
TAATAAAAATCAATTCTAATCAGGGTAAACTTTTTAAAATGAGAAATCCT
CATTATCTGTCACTTAACATAATTGTACCCAGCCTACCTTCTGTCCAACT
TCCTTACTACAATTGATACCCCTGCACCCTGTGTCCCTTCTAACCATCAC
AGTTATTCTGAACAGCTCTTGACTCTCTCAGCTCCATCAGCTTCCCTCTC
CCTGTAGATGATTGTTCTCATAGCCATTAAACAACTAAGATGTTAACTTT
TTCCACCTTAAAACAAGTAAGTCACATTGGCCATTTTTCTATCCACTTCT
TCCCATTTCTCTCCTTTCTTCCAGACAAAATTTATAAACACCTAAGTTGG
CAGTCTTTAGGTTTTGTTTTTGTTTTTTCTTCCCTAAGTATCTTGAATTC
CATTCAAGTGTTCTTAGAGAATAAGGGATGATACTCAN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGCACCCCATTTAA
AAATAGCGTTATTTGATTCTCTATAGTCACTTCTTGAGTTTTTTGTATAT
ATTGGCTATAAGCCCACTATTGGATGTAGGGTTGGTAAAGATCTTTTCCC
AATCTGTTGGTTGCCATTTTGTCCTATTGACAGTGTCCTTTGCCTTACAG
AAGCTTTGAAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTAGAGC
ATAAACTATTTGTGTTTTGTTCAGAAAAAAAATTCCCCTGTGCTTATGTG
TTGGAGACGCTGTTTTTTGTTACCCCGCCCCCCCGGTAGATAAATGGAAT
AGAATTGAAGACACAGATACCAACCCACACATCTATGGTCACCTGATCTT
TGACAAAGGAGCTAAAACCATCCAGTGGAAAAAAAGACAGCATTTTCACC
AAATGGTGCTGGTTCAACTGGCAGTTATCATGTAGATGAATGCCAATCGA
TCCATTCTTATCTCCTTGTACAAAGCTCAAGTCCAAATGGACCAAGGATC
ACCACATAAAAGCAGATAAACTGAAACTAATAGAAAAGAAAGTGAGGAAG
AGCCTTGAGCACATGGGCACAGGAGAAAATTCAGGGTAATCTAAGGGAAG
CTAAATAAAGGGAATCTGTAAGCATCTTCCTGACAGACTGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_j13.b1 MSMg01no156_j13.b1 CHROMAT_FILE:
MSMg01no156_j13.b1 PHD_FILE: MSMg01no156_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:46 2005
         (324 letters)



>mm_chr6_18292923_18293646
          Length = 724

 Score =  613 bits (317), Expect = e-180
 Identities = 320/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactatgtagaccaggctagacttgaattcacagagatctgccagcctatgctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaattcactatgtagaccaggctagacttgaattcacagagatctgccagcctatgctt 566

                                                                       
Query: 64  ctgagcgctggcattaaagatgtgtactactgtacccagcttcaggtgcccctctgccaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgagcgctggcattaaagatgtgtactactgtacccagcttcaggtgcccctctgccaa 506

                                                                       
Query: 124 tcacatggccttatttcgtgtgttggtcatggctctaaaatgtcgaatttgttaaagata 183
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcacatggtcttatttcgtgtgttggtcatggctctaaaatgtcgaatttgttaaagata 446

                                                                       
Query: 184 gcagaccctatttccttcttaacttaatgacttccttccatccttattctcaattgatga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagaccctatttccttcttaacttaatgacttccttccatccttattctcaattgatga 386

                                                                       
Query: 244 cctttatgttactaataaaaatcaattctaatcagggtaaactttttaaaatgagaaatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctttatgttactaataaaaatcaattctaatcagggtaaactttttaaaatgagaaatc 326

                                
Query: 304 ctcattatctgtcacttaaca 324
           |||||||||||||||||||||
Sbjct: 325 ctcattatctgtcacttaaca 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)