BAC Information

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BAC

Clone NameMSMg01-156O23
Chromosome6 (Build37)
Map Location 94,224,536 - 94,225,056
singlet/doubletsinglet
Overlap geneMagi1
Upstream geneLOC100043253, LOC665831
Downstream geneLOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156O23.T7 (MSMg01no156_o23.b1)MSMg01-156O23.TJ (MSMg01no156_o23.g1)
ACCAG357547AG357548
length734885
length of high quality
(start - end)		640 (46 - 685)31 (748 - 778)
definitionCHROMAT_FILE: MSMg01no156_o23.b1 PHD_FILE: MSMg01no156_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:11 2005CHROMAT_FILE: MSMg01no156_o23.g1 PHD_FILE: MSMg01no156_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTGGTGGCAGTTCTTAGGGTCACCAGGTGGTTGATCTAGTCCA
CTTGAGCCACCTGAGGATCTCGTAGACAGAGCAGCCCTTATATACCCATG
TCTTTATTAGATACCCGTTACTTTGTTTCCCACCCTGCCTTCTCCCCACC
ATCATGTGGGTCTTAAATGAAATTTCTAGGAGCACACCTGAGATCAGCTT
TTTTTTTCATTTTTATTTATTTATTTTTGAAACAGTCTTTTTACCGTTGT
TCAGATTTGCCTGGGCTTTACTGTGTTACCAGGCTGGCTACCCTCCTGTC
TCAGCCTCCCCAGTTGATTATTTGAATGTCAGTAGTTTATCAGAGAGGTG
GTCAGTCCTAAGGACCTTGGAGGCCCAGAGGCCAGCCAGGTGTTTAAAAA
CCTTGCTAAGGAAGAACTTGGGGCTTGGGGCAGCAGCTTCCTACTGATTG
CATCAGAGAAGTTTATGGATGTTTTACTCCTTCTGTGGTTGGTGAGAGCT
TCCTCCTGCTGGCTATCCATCCCTGTGCATTTGTTTTTTTCTGTAACTAT
CTCCAGTGTTGGGAGAAAGAGTTATGTAAGAAAATTATACTCTCATTGCT
AAGGTTATTGCTAAGGTATCAAGCCAAGCAGAGTCGGTTGTGTGTGTGCT
TTTAATGGGCCACGGTTATGTTTGCTGCATAAAG

NGGGAGTTTNNTNTTTTTNNNNNNNNNNTNNTTNNNNNNNNNNNNNNNNN
NNNNNNNNNTTNTTTTTTTTNTTATTAATATTTNNNNNNNNNNNTNTTTT
TNNNNNNNTTTNTNCTTCCTTTTTTTNCNNNNNTTNTTTTNNNTTNNNTT
TTNNNTTTTTTTTTTTNNTNNNNTTNNNNNNNNNNNNNNNNNNTNNNNTN
NTNTTTTTTTTTNTNNNNNNNNNNNNNNNNNNNCNTTTNNNTTTTTTTTT
TTTTTNTNTNTTTTNNNNNNNNNNNNNNNNNTTNTTTNNNNTTTTTTTTN
TNTTNNNNNNNTTNNTTTTTTTTTTTNTTTTTTTTTTNNTTTTTTNTNTN
NNTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTAAATAAAAAAAGTAAGAA
AAAAGTAAGGTGGGGNNNNNNNTTTTTTTTTAAAAAAAAAAGAAGTAAGA
CCGCCAGGGGGGATAGTTANAGAGAAAAGGGTTAGTCTNNNNNNNNNNNN
NNNNNNNNNNNNCCCCCCTNNNNAAAAAAANNNNNNNNTTTNNNNNNNNN
NNNNNNNNTNNNNNTNNNNNNNTNNNNNNTAATAGGAGGGGGGAGGGTGN
TNNTNNTTTNTNTTNTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNNTTNNNTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTT
TTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTNTTTNTTTTTTTTATA
AAGAAGGGAGGAGTGAAAAAACTANCNCNTTTNNNTTNTTTTTTTNTTTT
TTTTTTTTTTTTTTTTTTTATTTATGGAGAGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_o23.b1 MSMg01no156_o23.b1 CHROMAT_FILE:
MSMg01no156_o23.b1 PHD_FILE: MSMg01no156_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:11 2005
         (640 letters)



>mm_chr6_94224017_94225056
          Length = 1040

 Score =  961 bits (497), Expect = 0.0
 Identities = 516/523 (98%), Gaps = 2/523 (0%)
 Strand = Plus / Minus

                                                                        
Query: 118  acccgttactttgtttcccaccctgccttctccccaccatcatgtgggtcttaaatgaaa 177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 acccgttactttgtttcccaccctgccttctccccaccatcatgtgggtcttaaatgaaa 981

                                                                        
Query: 178  tttctaggagcacacctgagatcagctttttttttcatttttatttatttatttttgaaa 237
            ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 980  tttctaggagcacacctgagatcagc--tttttttcatttttatttatttatttttgaaa 923

                                                                        
Query: 238  cagtctttttaccgttgttcagatttgcctgggctttactgtgttaccaggctggctacc 297
            ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 922  cagcctttttaccgttgttcagatttgcctgggctttactgtgtgaccaggctggctacc 863

                                                                        
Query: 298  ctcctgtctcagcctccccagttgattatttgaatgtcagtagtttatcagagaggtggt 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862  ctcctgtctcagcctccccagttgattatttgaatgtcagtagtttatcagagaggtggt 803

                                                                        
Query: 358  cagtcctaaggaccttggaggcccagaggccagccaggtgtttaaaaaccttgctaagga 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802  cagtcctaaggaccttggaggcccagaggccagccaggtgtttaaaaaccttgctaagga 743

                                                                        
Query: 418  agaacttggggcttggggcagcagcttcctactgattgcatcagagaagtttatggatgt 477
            |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 742  agaacttggggcttggggcagcagcttcctgctgattgcgtcagagaagtttatggatgt 683

                                                                        
Query: 478  tttactccttctgtggttggtgagagcttcctcctgctggctatccatccctgtgcattt 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682  tttactccttctgtggttggtgagagcttcctcctgctggctatccatccctgtgcattt 623

                                                                        
Query: 538  gtttttttctgtaactatctccagtgttgggagaaagagttatgtaagaaaattatactc 597
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622  ttttttttctgtaactatctccagtgttgggagaaagagttatgtaagaaaattatactc 563

                                                       
Query: 598  tcattgctaaggttattgctaaggtatcaagccaagcagagtc 640
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562  tcattgctaaggttattgctaaggtatcaagccaagcagagtc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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