BAC Information

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BAC

Clone NameMSMg01-157I03
Chromosome6 (Build37)
Map Location 16,785,401 - 16,785,692
singlet/doubletsinglet
Overlap geneTcfec
Upstream geneLOC100041116
Downstream geneEG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2, St7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157I03.T7 (MSMg01no157_i03.b1)MSMg01-157I03.TJ (MSMg01no157_i03.g1)
ACCAG357971AG357972
length715718
length of high quality
(start - end)
318 (40 - 357)292 (69 - 360)
definitionCHROMAT_FILE: MSMg01no157_i03.b1 PHD_FILE: MSMg01no157_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:51 2005CHROMAT_FILE: MSMg01no157_i03.g1 PHD_FILE: MSMg01no157_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGA
GTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCG
ATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTC
TTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTC
CCATTTATCGATTATTGATCTTACAGCACAAGCCATTGCTGTTCTATTCA
GGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCTACTTTCTCCT
CTATAATTTTTTTTGTCCCCGCCCCCCATGTGTAGTTCCTTAATCCACTT
AGATTTGACCTTAGTACAAGGAGATAAAAATGGATCAATTCGCGTTCTTC
TACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCT
TTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATA
GGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCGTTGGTCTACTT
GTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGTTCTGTAG
TACAGTTTTAGGTCCGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTT
GAGAAGAGTTTTTGC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATAAGAACTTACAAAATCTTTTACATTAATAT
GAAATAATGATTTACATGACTATTATTCACTCTTAGATATTATTGCTTCT
GAATAGAAATTTTAATAGAATAGTTAAAAAGCCCTTATATAGTAAAATTA
ATCCCAGAATGAAAATAAGTGTCAAAAGAAAGTAATAAAGTGACTTTTTG
TGGGAGAGCTAAACGCAATATCATGATTCTACCATTACAGTTTTTATATT
TTTAGTGAAAATTGCTTTTATTATAACCTCTAAGATTAAAATCTATGTGC
AGTATTTCTGTTTTATTGCACCACCCCACCGGGTGNATTACTGATGACTA
AACCTAATTTTTTTAAGATTGTTTCAGATGANCCAATCTTTTAACCCNTT
TCCTAATATGGTTGCTTTTGTTTCTAAGAAAGAAAAAATACATTCTTCCC
TGAGGCGAGGGNNNNNNNNNNNNTTCCCAACAGCTGAATTGGGAAAATCT
AGAAAGTCGACTACTNNNNNNNCNNNNACAATAATCNCNNCNCNNNNTNT
ACCCAATAAATGATAGCNNNNNNNNGTGTGTTGGCNNNNGCGCAACAACC
TAAATTTACCCATTTTTATTTATAGANGAGANCNCCTCCTCTTTTTTAAA
GACCNNATTACGGTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_i03.g1 MSMg01no157_i03.g1 CHROMAT_FILE:
MSMg01no157_i03.g1 PHD_FILE: MSMg01no157_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:52 2005
         (292 letters)



>mm_chr6_16785201_16785892
          Length = 692

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%), Gaps = 2/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagaacttacaaaatcttttacattaatatgaaataatgatttacatgactattattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagaacttacaaaatcttttacattaatatgaaataatgatttacatgactattattc 260

                                                                       
Query: 61  actcttagatattattgcttctgaatagaaattttaatagaatagttaaaaagcccttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 actcttagatattattgcttctgaatagaaattttaatagaatagttaagaagcccttat 320

                                                                       
Query: 121 atagtaaaattaatcccagaatgaaaataagtgtcaaaagaaagtaataaagtgactttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagtaaaattaatcccagaatgaaaataagtgtcaaaagaaagtaataaagtgactttt 380

                                                                       
Query: 181 tgtgggagagctaaacgcaatatcatgattctaccattacagtttttatatttttagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgggagagctaaacgcaatatcatgattctaccattacagtttttatatttttagtga 440

                                                                
Query: 241 aaattgcttttattat-aacctctaagattaaaatctatgtgcagtatttctg 292
           |||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 441 aaattgcttttattattaac-tctaagattaaaatctatgtgcagtatttctg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)