BAC Information

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BAC

Clone NameMSMg01-157P05
Chromosome6 (Build37)
Map Location 129,399,176 - 129,399,853
singlet/doubletsinglet
Overlap geneClec1a
Upstream geneEG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a
Downstream geneClec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157P05.T7 (MSMg01no157_p05.b1)MSMg01-157P05.TJ (MSMg01no157_p05.g1)
ACCAG358294AG358295
length7291,231
length of high quality
(start - end)		682 (43 - 724)---
definitionCHROMAT_FILE: MSMg01no157_p05.b1 PHD_FILE: MSMg01no157_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:24 2005CHROMAT_FILE: MSMg01no157_p05.g1 PHD_FILE: MSMg01no157_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGAAAACACAGAGCTTCTTACAATCCTCTTCACATTCCTCTCATAA
ATCTTTCTGTAGAGCATCCTCAGCCTGGGCATTCCCAATCCTGGCTCTTT
ATAATCTTAAAATCAATTCAATACAATGAATACTCTCACCAGACCTTCTT
GGGTCTCCTTTAGCCCCTAGACACAGATGGCCAGGCTTTCTTGTGCTTGT
ACGTGCTTCGTGGTAGTATGATATTATATGTAAAGCTGAGTTGGGAACCC
GTTTCTCTCATAGCTCATAGCGGATAGTCTGCCGTGTTTAGCACTCTGTG
CCCAGTCCTTGGCATACTTGATCTGAATTTGTGGAAATTTGGTATACAGT
TATTTCTTTTATTTTTGACTTTCTGTCTTCATAACTGTTTTGTATTTTTA
GATAAGCACAATTGTTATATGGATAACATTAAAAATCTCAAAAACACCTG
TGGTATTTATTTCAAACAGTTCAAAAAAATACAGTTAAAAAAAAAGTCCA
CTTATATTTTGTCACAGCATCATATTGAATCTGAAATTTCCCCAAATTCT
GATTTCTACTGCTATTTCTATAGCCGAGGTATGTAAAAACTGTTTTCTTA
CAAAAAGTTTTTATGACATTCCTCTAAATGTTTGAGCATCACAAGACGAA
ACCGAGATATCACACAGGGAGGCTGAGGN

TATAATATGATTAAGATTTCTGGTTCGTGCCCGCCCTGCGCCCGCGCGAA
GAATTACACGGGAGAGGACCTAGTACGACAGTGTAGGCGGCCCGGCAACT
TCCACCAATATAAATATGTGTGCATGTGGTAGTGTCCATATTCTGTTCCC
AGCGTTTCCTCTATATGATTGTCCGCCTATGCTCCGGCCGGTAGATAGAT
GAGAAGACAACACAGCGAGAGGAGTGCGTGTAGTATAATGTCGGAAACAT
CCTAGTCATTTCCCAGAATGTGAGTCAGAGCTAGCCATATACTTCCACCT
CATCTTTCTCGCCGAGCGACACAAAAGGGTGGAGGCTCTCTCGAGGGCGC
GCGCCGCGCGTACAGAAAGTCATACGCACCTCGGTCACCCCTTGCTGTCG
GTGGTGACCGTTCGCTTAATCTGCTCGACAATGTAGATGGTTATTTGTGC
TTCGTGGTATTACTTCTATCTTTGCTTCTGTTCTTGGCTGCGTAGCGAGA
GACTAATCTACCGCCGCTTATATTGCGCGGGGCGGTCGTATTATGAGAGA
TGAAAGAGGGAGGCGGCAGTCGACAGACGCCGCGGTCGGCACGTCGCGAA
TGTAGGGATGAGAGTTTGTCTTTGAATGATATGAGTGTGTGCCGCTGTAG
TAGACGGAATAGCTTGTGGAGAGGTGCCAGTATATATATCAACCGGATGT
CTGTACGTAGAAGTAGCACCGCGCGGTATAACATTCTTCTTCTTCCTATT
TGACCTCGGACCCCTCTCTGCGCATCTGCATAGTATACGCAACACCATGT
AATATGCCGATTTTATATTCTCTCTCTGCGGTTCTTCTTATACACGCGCA
TCTTATGTGAGAGAGAATTAGAAGCTCCGCACATTGCCTACTCTGCTGTT
CTTCTTACATTTACAGTCGCGCGCACATGCTACAGGCATAGATTGAGACT
CTAGTCGACTGTCAACGGACGAGACTGATAAGCGATAGGAGCATATTTAC
ATACACCGCAACGACTAAATTATATAAATACTATCATTGATGTGAGTTGC
GGCATATGCGCATTAATTAAGTTAACGATAGGCACTGTACTCGCGACAAA
TGAATGCGTTAAATATACAAGTGTGACGAATAGACTGCTGACACAAGAGT
TAGCGCAATAGCGAGGGCGCGATCACACCGCGCGATAGTACTGATGTGTT
GTATGATATGTTGATATCACGTCGACACGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_p05.b1 MSMg01no157_p05.b1 CHROMAT_FILE:
MSMg01no157_p05.b1 PHD_FILE: MSMg01no157_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:24 2005
         (682 letters)



>mm_chr6_129398972_129400053
          Length = 1082

 Score = 1257 bits (650), Expect = 0.0
 Identities = 671/678 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgaaaacacagagcttcttacaatcctcttcacattcctctcataaatcttt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgaaaagacagagcttcttacaatcctcttcacattcctctcataaatcttt 264

                                                                       
Query: 65  ctgtagagcatcctcagcctgggcattcccaatcctggctctttataatcttaaaatcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 ctgtagagcatcctcagcctgggcattcccaatcctggctctttataattttaaaatcaa 324

                                                                       
Query: 125 ttcaatacaatgaatactctcaccagaccttcttgggtctcctttagcccctagacacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcaatacaatgaatactctcaccagaccttcttgggtctcctttagcccctagacacag 384

                                                                       
Query: 185 atggccaggctttcttgtgcttgtacgtgcttcgtggtagtatgatattatatgtaaagc 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggccaggttttcttgtgcttgtacgtgcttcgtggtagtatgatattatatgtaaagc 444

                                                                       
Query: 245 tgagttgggaacccgtttctctcatagctcatagcggatagtctgccgtgtttagcactc 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgagttgggaacctgtttctctcatagctcatagcggatagtctgccgtgtttagcactc 504

                                                                       
Query: 305 tgtgcccagtccttggcatacttgatctgaatttgtggaaatttggtatacagttatttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 tgtgcccagtccttggcatacttgatctgaatttgtggaaatttggtgtacagttatttc 564

                                                                       
Query: 365 ttttatttttgactttctgtcttcataactgttttgtatttttagataagcacaattgtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttatttttgactttctgtcttcataactgttttgtatttttagataagcacaattgtt 624

                                                                       
Query: 425 atatggataacattaaaaatctcaaaaacacctgtggtatttatttcaaacagttcaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atatggataacattaaaaatctcaaaaacacctgtggtatttatttcaaacagttcaaaa 684

                                                                       
Query: 485 aaatacagttaaaaaaaaagtccacttatattttgtcacagcatcatattgaatctgaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaatacagttaaaaaaaaagtccacttatattttgtcacagcatcatattgaatctgaaa 744

                                                                       
Query: 545 tttccccaaattctgatttctactgctatttctatagccgaggtatgtaaaaactgtttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttccccaaattctgatttctactgctatttctatagccgaggtatgtaaaaactgtttt 804

                                                                       
Query: 605 cttacaaaaagtttttatgacattcctctaaatgtttgagcatcacaagacgaaaccgag 664
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 805 cttacaaaaagtttttatgacattcatctaaatgtttgagcatcacaagacaaaaccgag 864

                             
Query: 665 atatcacacagggaggct 682
           ||||||||||||||||||
Sbjct: 865 atatcacacagggaggct 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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