BAC Information

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BAC

Clone NameMSMg01-158B08
Chromosome6 (Build37)
Map Location 115,322,948 - 115,432,707
singlet/doubletdoublet
Overlap genePparg
Upstream geneHrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4
Downstream geneTsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158B08.T7 (MSMg01no158_b08.b1)MSMg01-158B08.TJ (MSMg01no158_b08.g1)
ACCAG358394AG358395
length728734
length of high quality
(start - end)
681 (48 - 728)390 (77 - 466)
definitionCHROMAT_FILE: MSMg01no158_b08.b1 PHD_FILE: MSMg01no158_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:33 2005CHROMAT_FILE: MSMg01no158_b08.g1 PHD_FILE: MSMg01no158_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,322,948 - 115,323,625)(115,432,318 - 115,432,707)
sequence
AATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTCTGTACACTATGCTGACTTCAAACTCAAAGATCTGCCTGC
ATCTGCCTCCTGAGTAAAGGGCTCAAAGCTGTATGCCACCATGCCCATCT
TTTAATAGATGGTACTTTAATTGCTCAGCTATTTCATGTATTAACCACAA
GTATTACCATCATGGTTATTTAATAGTTAATATTTTCCAAGAAAGATCTG
TATTTATGAACAACTTCAAAGTATTAGAATGAGAAACTGAATTGCATATA
AAAGCAAATACAAAAGATGAGCCTCTTTAAAAGATGCTTTGTGACATCTC
TGGACACCCGATTCTTCCTGGTACCCCTTCATCTGTAGATGTTGAATGAA
GGTAGGAGTCTGTTTGCCAACATGAATACAGGGAACCTGCACCTTCTCCA
CCCTTGGGCAACCTGCCATTTTCCTCCCATTCTCACACCTGCTCAGCTAC
TAGGGCAAAGAAACACTGGCTAGACATGCGCAGACCCTTTGCTTCCTGAG
AAAGAGCACAACGGGAAGGATAACGAGCTCAAGGAGGTTTGAGATGTGCT
CTCATTGAATATCCAAACCTCAGTTTCGTTTTAGTACTCTTTCATGTCTC
GCTGCACACAGGGAATTAAACCCCTCCACACAAACAATTAAATTGTTTGG
CTAGGCTCTTGACTCAGAGAAAGATAGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTCTTCACGCATACAAGGCAGG
TATGAACTCTCTTCTCTGCTCATTATGAAGGCAAACAATGGTTTTAAGCG
GAGCTAGAATGGTAAAGTAAGTCACAGTTTTCTGAGTGTTGAGTGTGTTC
ACACATGTAGCAGGCTTCCGAGCTTTAGCTCAGGGGTTACTCCTTCACTT
GTCCCTTATTCTGCTGTGCCCCTGGTTTTCCTGGGTTCTCTCTTCCCTGC
TCTTCTTCCCTTAGCCATTCCCTTCTTTTCAGCTTTCCCTCACCTTCCCT
GTTCCAGATGTTTCCTTCTTTCCAATCCTGGGTTGAGGATTTATTAGGAA
AGTTAGCAGAGTCAACCCAAATTAACGAGAGGTCTGACCAACAGATGATT
TGAGGCGTGGGGTGGTTTACTGCTGCTATCAAAGAAATCAGGGTGCAGTA
AAACAGAAGCCTTGCAAATGCTTCACAGATAGATATCATCTGCCTGCTGC
AGGACGCATTGTGCACATGTTGCTGGTGGACCCTCCCTCTGACGCACTGA
AACATTCTTACACTTCCCTGTTCAAGCAATGATTTCACGTTAATCAATGC
TTTCTCTATGTTGGATAACAATAGGTTTACCAAAATGGTAGAAGGGGAAA
ACCACAATGAAATCTGTTTATCTGTCCATCAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_b08.b1 MSMg01no158_b08.b1 CHROMAT_FILE:
MSMg01no158_b08.b1 PHD_FILE: MSMg01no158_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:33 2005
         (681 letters)



>mm_chr6_115322745_115323825
          Length = 1081

 Score = 1226 bits (634), Expect = 0.0
 Identities = 667/678 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtacactatgctgacttcaaactcaaagatctgcctgcatctgcctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtacactatgctgacttcaaactcaaagatctgcctgcatctgcctcc 263

                                                                       
Query: 64  tgagtaaagggctcaaagctgtatgccaccatgcccatcttttaatagatggtactttaa 123
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtgtaaagggctcaaagctgtatgccaccatgcccatcttttaatagatggtactttaa 323

                                                                       
Query: 124 ttgctcagctatttcatgtattaaccacaagtattaccatcatggttatttaatagttaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgctcagctatttcatgtattaaccacaagtattaccatcatggttatttaatagttaa 383

                                                                       
Query: 184 tattttccaagaaagatctgtatttatgaacaacttcaaagtattagaatgagaaactga 243
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 384 tattttccaagaaagacctgtatttatgaacaacttcagagtattagaatgagaaactga 443

                                                                       
Query: 244 attgcatataaaagcaaatacaaaagatgagcctctttaaaagatgctttgtgacatctc 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttgcatataaaagcaaatacaaaagatgagcctctttaaaagatgctttgtgacatctc 503

                                                                       
Query: 304 tggacacccgattcttcctggtaccccttcatctgtagatgttgaatgaaggtaggagtc 363
           |||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||
Sbjct: 504 tggacacccgattcttcctggtaggccttcatctgtagatgttgaatgaagataggagtc 563

                                                                       
Query: 364 tgtttgccaacatgaatacagggaacctgcaccttctccacccttgggcaacctgccatt 423
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtttgctaagatgaatacagggaacctgcaccttctccacccttgggcaacctgccatt 623

                                                                       
Query: 424 ttcctcccattctcacacctgctcagctactagggcaaagaaacactggctagacatgcg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcctcccattctcacacctgctcagctactagggcaaagaaacactggctagacatgcg 683

                                                                       
Query: 484 cagaccctttgcttcctgagaaagagcacaacgggaaggataacgagctcaaggaggttt 543
           ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 684 cagaccctttgcttcctgagaaaaagcacaacgggaaggataacaagctcaaggaggttt 743

                                                                       
Query: 544 gagatgtgctctcattgaatatccaaacctcagtttcgttttagtactctttcatgtctc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gagatgtgctctcattgaatatccaaacctcagtttcgttttagtactctttcatgtctc 803

                                                                       
Query: 604 gctgcacacagggaattaaacccctccacacaaacaattaaattgtttggctaggctctt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gctgcacacagggaattaaacccctccacacaaacaattaaattgtttggctaggctctt 863

                             
Query: 664 gactcagagaaagataga 681
           ||||||||||||||||||
Sbjct: 864 gactcagagaaagataga 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no158_b08.g1 MSMg01no158_b08.g1 CHROMAT_FILE:
MSMg01no158_b08.g1 PHD_FILE: MSMg01no158_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:33 2005
         (390 letters)



>mm_chr6_115432296_115433085
          Length = 790

 Score =  692 bits (358), Expect = 0.0
 Identities = 382/390 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtcttcacgcatacaaggcaggtatgaactctcttctctgctcattatgaaggcaaac 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctgtcttcatgcatacaaggcaggtatgaactctcttctctgctcattatgaaggcaaac 353

                                                                       
Query: 61  aatggttttaagcggagctagaatggtaaagtaagtcacagttttctgagtgttgagtgt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aatggttttaagcagagctagaatggtaaagtaagtcacagttttctgagtgttgagtgt 293

                                                                       
Query: 121 gttcacacatgtagcaggcttccgagctttagctcaggggttactccttcacttgtccct 180
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 292 gttcacacatgtagcaggtttctgagctttagctcaggggttactccttcacttgtccct 233

                                                                       
Query: 181 tattctgctgtgcccctggttttcctgggttctctcttccctgctcttcttcccttagcc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tattctgctgtgtccctggttttcctgggttctctcttccctgctcttcttcccttagcc 173

                                                                       
Query: 241 attcccttcttttcagctttccctcaccttccctgttccagatgtttccttctttccaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 172 attcccttcttttcagctttccctcaccttccctgttccagatgtttccctctttccaat 113

                                                                       
Query: 301 cctgggttgaggatttattaggaaagttagcagagtcaacccaaattaacgagaggtctg 360
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 112 cctgggctgaggatttattaggaaagttagcagagtcaacctaaattaacgagaggtctg 53

                                         
Query: 361 accaacagatgatttgaggcgtggggtggt 390
           ||||||||||||||||||||||||||||||
Sbjct: 52  accaacagatgatttgaggcgtggggtggt 23


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)