BAC Information

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BAC

Clone NameMSMg01-158I24
Chromosome6 (Build37)
Map Location 143,112,248 - 143,112,537
singlet/doubletsinglet
Overlap geneEtnk1
Upstream geneSlco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik
Downstream geneD6Ertd474e, Sox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158I24.T7 (MSMg01no158_i24.b1)MSMg01-158I24.TJ (MSMg01no158_i24.g1)
ACCAG358745AG358746
length703703
length of high quality
(start - end)
319 (35 - 353)293 (65 - 357)
definitionCHROMAT_FILE: MSMg01no158_i24.b1 PHD_FILE: MSMg01no158_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:06 2005CHROMAT_FILE: MSMg01no158_i24.g1 PHD_FILE: MSMg01no158_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAGG
AGATCCTAAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGGAGTCTGG
TTCGAACACCAGATATCTGGGTACCTGCCCTGCAAGAAGAGAGCTTGCCT
GCAGAGAATACTCTGCCCACTGAAACTAAGGAGAGTGCTACCCTCCAGGT
CTGCTTATAGAGGCTAACAGAGTCACCTGAAGAACAAGCTCTTAACAGTG
ACAACTAAAACAGCTAGCTTCAGAGATTACCAGATGGCGAAAGGCAAACG
TAAGAATCCTACTAACATAAATCAAGACCACTCACCATCATCAGAACGCA
GTATTCCTACTCCANNTACTNNCGCGCACCCCAACACAACCGAAAATCTA
GACACAGATTTAAAAACATTTCTCATGATGATGATAGAGGACATCAAGAA
GGACTTTCATAAGTCACTTAAAGAATTACAGGAGAGCACTGCTAAAGAGT
TACAGGCCCTTAAAGAAAAGCAGGAAAACACAGCCAAACAGGTAGAAATC
ATTAAAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAA
AACCATACTAGAACTAAAAGGGGAAGTAGACACAATAAAGAAAACCCAAA
GCGAGGCAACGCTGGAGATAGAAACCCTAGGAAAGAGATCTGGAACCATA
GAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCATCCCTAGGATCAACAAGGGAGGAGAAGAGGGCAG
ACTTCTACAAGTTGTCCTCTGCTTTGGATACTATTCTCCTCAGAAAAATA
AATACAATGTAATAAAACTGTGAACTGTAAAATAATGTCAAAAAAAGAAG
TAAGAAAGGAAAAATAAAATTCAGTGTAAGAAATGAGGCCAAGATGCCTG
GGCTGCACCTGAGTTTGCCCCGAGACCACTATCACCATCACTACCACCAC
CACCACCACCATCACCACCGTCACCACTAATCAGGAAAGAAAATAAACAA
GAGAATTTTTTTTGCCCCCCCCCCACCTGGGATAAGTCTTATGTTGGGGA
ATCAGTCCTTGAACCGAGTGAGTGAACTTTCAAGGAAGACCCATACACAC
GGGAAGCAACTGGCACAAACTGGATGCTTCCTGATAACGTTTGTCGTGAC
AACTGCCGTGCATCCTTTCGGTGTTTGTCACATGGTGCTACAGTTTTACT
GACCCACTGGAAAGAAGACTAGACCCAGGATAACAGATGAGCTGGCCATC
AAAAACATCCATCATAGTCTGTGGACATTTGATGACGGAATCCCTGACAG
AGGCTGGCAGAGTGTCAAGTCCTTACTAGCATGGCTTACAGTTGATTAGC
ATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_i24.g1 MSMg01no158_i24.g1 CHROMAT_FILE:
MSMg01no158_i24.g1 PHD_FILE: MSMg01no158_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:06 2005
         (293 letters)



>mm_chr6_143112048_143112739
          Length = 692

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccctaggatcaacaagggaggagaagagggcagacttctacaagttgtcctctgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccctaggatcaacaagggaggagaagagggcagacttctacaagttgtcctctgctt 260

                                                                       
Query: 61  tggatactattctcctcagaaaaataaatacaatgtaataaaactgtgaactgtaaaata 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tggatactattctcctcagaaaaataaatacaacgtaataaaactgtgaactgtaaaata 320

                                                                       
Query: 121 atgtcaaaaaaagaagtaagaaaggaaaaataaaattcagtgtaagaaatgaggccaaga 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 atgtcaaaaaaagaagtaagaaaggaaaaa-aaaattcagtgtaagaaatgaggccaaga 379

                                                                       
Query: 181 tgcctgggctgcacctgagtttgccccgagaccactatcaccatcactaccaccaccacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgcctgggctgcacctgagtttgccccgagaccactatcaccatcactaccaccaccacc 439

                                                              
Query: 241 accaccatcaccaccgtcaccactaatcaggaaagaaaataaacaagagaa 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 accaccatcaccaccgtcaccactaatcaggaaagaaaataaacaagagaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space:   193972
Effective search space used:   193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)