BAC Information

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BAC

Clone NameMSMg01-158P01
Chromosome6 (Build37)
Map Location 97,208,049 - 97,208,334
singlet/doubletsinglet
Overlap genenone
Upstream geneC630007B19Rik, C130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3
Downstream geneFrmd4b, LOC641241, LOC100043692, Mitf, Gm765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158P01.T7 (MSMg01no158_p01.b1)MSMg01-158P01.TJ (MSMg01no158_p01.g1)
ACCAG359012AG359013
length759734
length of high quality
(start - end)
195 (46 - 240)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no158_p01.b1 PHD_FILE: MSMg01no158_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:33 2005CHROMAT_FILE: MSMg01no158_p01.g1 PHD_FILE: MSMg01no158_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCTGAGCTCAAGGATCACAGATGAGAACTGGGTGTGGTGGTGCA
CGCCTTTAATCCCAGCACTCGAGAGGCAGAGGCAGGTGGATTTCTGAGTT
CGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACAC
AGAGAAACCCTGTCTCCAAAAACCAAAACCAAAAAGGGGGGGGCGGAGGG
ATCACAGATGAATACTTCCTCTGGTTTCTATGGGTTCAAGGGATCTGAAC
TCAGGGCCTCATATTTGCCTATTGTCTTAGGGCTACCATTGCTGTGACGA
AACACCCTTTCNAATAGNTTTCCCGGACAGGCCCCCTTTTATTTGTTTTA
TANTTTTGNGCCNCAGGCCCCCCCAACNGGAGGTAAAAAACCGGTTCTTG
TCCCGCGTCCGCAATTCACATCCCGCCTCTGATGCCCCGCCCCTTACCGT
CCTGTACCCCCCTGGCCTTTCTCCCCCTGTCTCGTTTTTGCTTGATTCCC
CCCTCCTCTCCCCTACCTCCTCCCTTACCTGTCGCCCCTCTTCTCCCTCC
CCCCCCCTTTTCCTTCCGCCCCCTTCCCCCCCTTTACTCCTTCCCCTTTC
CCCCTCGCCCCTCTCCCCCCCCTTTTTCCCCCCCCCTTTCTCACCCCCCC
CCCCCCGCCTTAATCCGCTTCCCCCTTCTTCCTCCCCCCTTTTTCTCCCC
CCCTTCTCN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAACTTTGGCACAATATGCCACAG
GGATTGATGGGAATTGCACAGGAGGAAAGCATTGTTGTCCAGATCCTGCA
GGAGCCTAGGACTACGCATGCATGCACACATGCATATACACACACATGCA
CACACACATAAATGTACATGTGAGAGCTTCAGGTTGATCAAAAGCCAGGA
ATCCTATACCCTCATGTCACAAAAGAATCATCATATTTCCAAGTACAGAT
GTTCGTCTTGTAGAAGGCCGTCCGTGTGTCTGATGTCTGTTCCTCTAGTG
ACACGTTTCCTTCATCTTCCCTCCCCCCCCGCCCATTTCTTGTGCAGCTT
CCCAGAGTTACTAAATCCATTTTGAGTAAATGTGCGTGGATAAATTATTA
TCTTTCATACAAATGTGTATTATGAATATTAATCTCTTACAGAGATAAGC
CACCACGTATCTAACATTTTTCCCTAATTTATTTAAAAACTGTTAGATCA
TCTCAGATGTAGAGAATTGACAGCAAGTGGTTTTCCTTGGTGCGGTTTCT
CCTCCCTTACTCCCTATTCCAGTTTCTTTCCCTCCCTGCCCCCTCCTACT
CCTCTCCCCCACCCCTCCCTCAATCTCTCCTTCTTCCATTAAACTTAGAT
GTGCTCCTCTTCTGTGGCATGGGTAGTAGAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_p01.g1 MSMg01no158_p01.g1 CHROMAT_FILE:
MSMg01no158_p01.g1 PHD_FILE: MSMg01no158_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:33 2005
         (286 letters)



>mm_chr6_97207714_97208399
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaactttggcacaatatgccacagggattgatgggaattgcacaggaggaaagcattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaactttggcacaatatgccacagggattgatgggaattgcacaggaggaaagcattgt 562

                                                                       
Query: 61  tgtccagatcctgcaggagcctaggactacgcatgcatgcacacatgcatatacacacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtccagatcctgcaggagcctaggactacgcatgcatgcacacatgcatatacacacac 502

                                                                       
Query: 121 atgcacacacacataaatgtacatgtgagagcttcaggttgatcaaaagccaggaatcct 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcacacacacatgaatgtacatgtgagagcttcaggttgatcaaaagccaggaatcct 442

                                                                       
Query: 181 ataccctcatgtcacaaaagaatcatcatatttccaagtacagatgttcgtcttgtagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataccctcatgtcacaaaagaatcatcatatttccaagtacagatgttcgtcttgtagaa 382

                                                         
Query: 241 ggccgtccgtgtgtctgatgtctgttcctctagtgacacgtttcct 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccgtccgtgtgtctgatgtctgttcctctagtgacacgtttcct 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)