BAC Information

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BAC

Clone NameMSMg01-159M06
Chromosome6 (Build37)
Map Location 49,688,068 - 49,688,358
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
Downstream geneNpy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159M06.T7 (MSMg01no159_m06.b1)MSMg01-159M06.TJ (MSMg01no159_m06.g1)
ACCAG359617AG359618
length737736
length of high quality
(start - end)
323 (43 - 365)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no159_m06.b1 PHD_FILE: MSMg01no159_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:33 2005CHROMAT_FILE: MSMg01no159_m06.g1 PHD_FILE: MSMg01no159_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAGAAA
ACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGCCTTAACTGGTACCAACGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTACAATAGCCAGAAGCTGGAAGGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAA
CTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAAG
ATACCCCAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAA
ATGAAGACTGAAGTGTGAACACTATGGCCCCTCCTAN
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCCCACTCTAAGGCAGTGGTGGAAG
GTCAGCAGGCCAGTAGTCTCTAGCTACACATTGGGGTCATCTGGTTCATA
TAAAATAGGACTGACCTGTGGTGCCCTGTGAATATTCCAAGCTAGTGTAG
GTGTGCAGCTAGGCCTCTGGGTTCCTGAGATCTTTTGGTAAAGCAGATAC
CGTCTGTGCTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCAC
AGAGAAAGGAGCTTCGGTTGAGGAAATGCCTCCATGAGATCCAGCTGTAA
GGCATTTCCTCAATTATTGTATCCCCCCCACCAGGCCCCTTGTGGGTGGA
ACCATCTCTGGGCTGGTACCCTTGGTTCTATAAGACAGCAGGCTGAGCAA
GCCAGGTGAGGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCG
GCTCCTGCTTTCTGACCTGCTTTAGTTCCAATCCTGACTTCCTTGGTGAT
AAACAGCAGTATGGAAATGTAAGCTGAATAAACCCTTTCCTCCCCAACTT
GCTTCTTGGTCAGGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACAC
CGTCTTGCTGAGACTGCAGTATAGGATAATGCTTCAAGTTTAGATCCGAC
CGCTCACTCTATTCAGGTTTATTGGATTTCAGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_m06.g1 MSMg01no159_m06.g1 CHROMAT_FILE:
MSMg01no159_m06.g1 PHD_FILE: MSMg01no159_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:33 2005
         (291 letters)



>mm_chr6_49687868_49688558
          Length = 691

 Score =  516 bits (267), Expect = e-151
 Identities = 285/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcccactctaaggcagtggtggaaggtcagcaggccagtagtctctagctacacattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcccactctaaggcagtggtggaaggtcagcaggccagtagtctctagctacacattg 260

                                                                       
Query: 61  gggtcatctggttcatataaaataggactgacctgtggtgccctgtgaatattccaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtcatctggttcatataaaataggactgacctgtggtgccctgtgaatattccaagct 320

                                                                       
Query: 121 agtgtaggtgtgcagctaggcctctgggttcctgagatcttttggtaaagcagataccgt 180
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 agtgtgggtgtgcagctaggcctctgggttcctcagatcttttggtaaagcagataccgt 380

                                                                       
Query: 181 ctgtgctggctagttttgtgtcaacttgacacagctggagttatcacagagaaaggagct 240
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ctgtactggctagttttgtgtcaacttgacacagctggagttttcacagagaaaggagct 440

                                                              
Query: 241 tcggttgaggaaatgcctccatgagatccagctgtaaggcatttcctcaat 291
           || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tcagttgaggaaatgcctccatgagatccaactgtaaggcatttcctcaat 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)