BAC Information

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BAC

Clone NameMSMg01-160A03
Chromosome6 (Build37)
Map Location 63,674,320 - 63,861,387
singlet/doubletdoublet
Overlap geneGrid2
Upstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099
Downstream geneAtoh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160A03.T7 (MSMg01no160_a03.b1)MSMg01-160A03.TJ (MSMg01no160_a03.g1)
ACCAG359790AG359791
length729742
length of high quality
(start - end)
194 (116 - 309)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no160_a03.b1 PHD_FILE: MSMg01no160_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:51 2005CHROMAT_FILE: MSMg01no160_a03.g1 PHD_FILE: MSMg01no160_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,861,194 - 63,861,387)(63,674,320 - 63,674,601)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCAGTG
GTTTTCTGGCTGCCAAAAGGCCAGGCTACTTTGACTATTTCGGCCTAAAT
GTAACTGTTCCTGCCCCCTTCCTGGCTGGCCCCAGGGGGCTCTCCTTTGT
TGCTTGCCAGAGTTTTGCCAACCTGCTGGTTCTCAGCTTTGTTGCCTTTG
TCCTCCAGCCCACTTGTCTGTTTACTGCTCAGACTCTCACAGTTGAAGCC
GGGTTAGGAGAAGAGAGGATAGCTTTGAATGTTTGTTTTCCATGCTTCTT
TACTTATTTGTTCTTAAAAACATTCTTTTCATAAAAAAACGGATAAACTT
TTATTTTTACCCCCCCCCCCCCCACAATCTTCAAGGGAAACACACTTCTA
AGTGAATTCCCCATGAAAAAAAAAAAATATTTATTCTCATTTGATCATAT
CTTGCTCCTGCCACTTCTGCTACTCTCAAAAATAAGGGGACAACTATGAT
CTATGAGCTTTATACTCCTTATGAAATGAACATCTTCATAACAGAATTGA
AAAAGCATTATTTTCCCTTGACATGGTATCACATGCAAAGGTTCCGAGGC
CAATGCATTTTTGCTCCGCCACAGTGTACTCTACGAAGCTGTGTGATATC
CCAAAGAGCGCACAATATTGGCTCCGTAATAGATTGCAGGGTTTGTGAAA
AAATAGCAAAGAAAATATTCGTGTCCAAN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTTTTTTTTCAAGCAGCAGATGC
AGTTTTCTACCCTTCTCACCCTCACCCAACTTTAGTTACAAGGGATTATG
TCTTAGTACCATTGAAACATTTCAAAGTAGAAGTTTAATACCATGTTCTA
TGGAAGGACCACTTCTGACTTGGGCATTCCAACATGGAAGCTATGAATGA
GAAAGCCAAGATTCAGATCAAACACTCTGCAGATGAATTCAGGGGGAAGA
ACATCATTTACTCATTATCTAGCCCGCTAAAATAAAGTAACCCTTTATAT
TTTAGCTAAATTTTTATTCCCCCCCCCCCCCAGCATCCAGTACTGTAATG
TTGACACATTTTCTGCACCCATTCTTCAAGTGAGGGAAATCTGTTTTCTT
TTTCCAGCTTCTGGCTATTAAAAATAAGGCTGCTATGAACATAGTGGAGC
TGGTGGGCCATCTTTTGGGTATATACCCAAGAATGATATAGCCGGGTCTT
CAGGTAGATGTATTTCTAGTTTTCGGGGGAACAGCCCGATTGATTTCCAG
AGTGATTGCATCAGTGTGCAATCCGCCCAGCAGCGGAGGAGTGCTCTCTT
TTCTTCCAACCTTTGCCAGCGTATCCTGCCCACTTGAAGTTTGTGAATCG
TAGCCATCCCTGATTGGTATTATTGTGTAAAGCCTTGTGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_a03.b1 MSMg01no160_a03.b1 CHROMAT_FILE:
MSMg01no160_a03.b1 PHD_FILE: MSMg01no160_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:51 2005
         (194 letters)



>mm_chr6_63860994_63861587
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccttcctggctggccccagggggctctcctttgttgcttgccagagttttgccaacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cccttcctggctggccccagggggctctcctttgttgcttgccagagttttgccaacctg 335

                                                                       
Query: 61  ctggttctcagctttgttgcctttgtcctccagcccacttgtctgtttactgctcagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctggttctcagctttgttgcctttgtcctccagcccacttgtctgtttactgctcagact 275

                                                                       
Query: 121 ctcacagttgaagccgggttaggagaagagaggatagctttgaatgtttgttttccatgc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctcacagttgaagcccggttaggagaagagaggatagctttgaatgtttgttttccatgc 215

                         
Query: 181 ttctttacttattt 194
           ||||||||||||||
Sbjct: 214 ttctttacttattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no160_a03.g1 MSMg01no160_a03.g1 CHROMAT_FILE:
MSMg01no160_a03.g1 PHD_FILE: MSMg01no160_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:51 2005
         (287 letters)



>mm_chr6_63674116_63674802
          Length = 687

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   tttttttcaagcagcagatgcagttttctacccttctcaccctcacccaactttagttac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tttttttcaagcagcagatgcagttttctacccttctcaccctcacccaactttagttac 264

                                                                       
Query: 65  aagggattatgtcttagtaccattgaaacatttcaaagtagaagtttaataccatgttct 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 aagggattatgtcttagtaccattgaaacattttaaagtagaagtttaataccatgttct 324

                                                                       
Query: 125 atggaaggaccacttctgacttgggcattccaacatggaagctatgaatgagaaagccaa 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggaaggatcacttctgacttgggcattccaacatggaagctatgaatgagaaagccaa 384

                                                                       
Query: 185 gattcagatcaaacactctgcagatgaattcagggggaagaacatcatttactcattatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattcagatcaaacactctgcagatgaattcagggggaagaacatcatttactcattatc 444

                                                     
Query: 245 tagcccgctaaaataaagtaaccctttatattttagctaaat 286
           ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 tagcccgctaaaataaagtaaccctttctattttagctaaat 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)