BAC Information

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BAC

Clone NameMSMg01-160I15
Chromosome6 (Build37)
Map Location 6,292,808 - 6,293,083
singlet/doubletsinglet
Overlap genenone
Upstream geneAsb4, Pdk4, Dync1i1, Slc25a13, EG667462, EG667468
Downstream geneLOC667471, LOC100040096, Shfm1, LOC545826, Dlx6as, Dlx5, Acn9, EG667500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160I15.T7 (MSMg01no160_i15.b1)MSMg01-160I15.TJ (MSMg01no160_i15.g1)
ACCAG360182AG360183
length706792
length of high quality
(start - end)
320 (10 - 329)276 (126 - 401)
definitionCHROMAT_FILE: MSMg01no160_i15.b1 PHD_FILE: MSMg01no160_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:31 2005CHROMAT_FILE: MSMg01no160_i15.g1 PHD_FILE: MSMg01no160_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCTATAGGGAGAGGATCCGCGGAATTCTCACCTGAGGAATATTGAAT
GGCAGAGAAGCACCTGAAAAAATATTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACACCGAGATTCCACCTCACACCAGTTAGAATAGCT
AAGATTAAAAATTCAGGTGACAGCAGATGCTGGTGAAGATGTGGAAAAAG
AGGAACACTCCTCCATTGTTGGTGGGACTGCAAGCTTGTACAACCACTCT
GGAAATCAGTCTGGTGGTTCCTTAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTTCTGGGCATATATTTTTTTTATGTCCCCCCCAC
CCCGAAGGACACATGCTCCACTATGTTCATAGCAGCCCCCCCCACAATAA
CCAAAAGCTGCAAAGAACCCAGATGCCCCTCAACAGAGGAATGGAAACAG
AAAATGTGGTACATTAACACAATGGAGTACTACCCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGCGTGGTAACCCAGTCACTAAAGAACTCACATGATATGCTGTCACTG
ATAAGCGGATATTATTCCAGATACTTACAATACCCACGATTTTAGATACA
ATTTTGTGATAACCATGAAACTCCCGATTGTAGTTCAATGCTGTGGTCTT
TGTTTT
TAACCGTATTCTCCATCCATTTTCCTANCCCCAATTCCTCTTNNNNCCCA
CTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCGGCTTTCTGTATCTAGGGCTCCCC
TGTTTGGTAACCCTCATCACATGGTCCTCACAGCATCCTTCCCTTGCTGC
ATCTCCATTTGAGTCCCCATAGCCAGAGATTCTCTGTCTCAACCCAAACC
TGAGCTGCTGAAGTCCCTGTTATTATGTAGTCCAGGGATCCCACAGATAG
CAGGAGCCTGGTGGTTTGAGGGACGGCTGGCAGCTTGGTTCCTGCTGGTC
CTGGCAGCTGTTATGTTTAGAGATTGCAGTGTGATGCAAAGGGAGCCATT
TGATTGTTTTTGCACCTCCCCCCCCCCAATGAATCTCTGTTCTTGATGAA
ATCAGTGCTCCCCCCTTTTTAAAAAAACCATGCTCTCTTCACTGTTTATA
TATCCAATCACTGAGCTGAGTAAACTCACCACTAACTATATGATTTGCGC
ATCCTATCTATCCCGCCAATGTGCCTCTCTGTTTCCCCTTATCATTTATA
CAATAGCCCATTATTTTTCTCTTTACCCCATACATATTATATATATTCTT
CCCCTTCTATATTCCTCTACTCCCCCCCCCCCCCTTTACATTATTTTTTT
ACTTCTCCAGATACTTCACTTTCGTTCCACCTTTTATTTTTGCCTACTTC
CACCTTCTCCTCAATTTTTCCTCTTATTTGCTTCCTCTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_i15.g1 MSMg01no160_i15.g1 CHROMAT_FILE:
MSMg01no160_i15.g1 PHD_FILE: MSMg01no160_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:31 2005
         (276 letters)



>mm_chr6_6292608_6293283
          Length = 676

 Score =  511 bits (264), Expect = e-149
 Identities = 273/276 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggctttctgtatctagggctcccctgtttggtaaccctcatcacatggtcctcacagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggctttctgtatctagggctcccctgtttggtaaccctcatcacatggtcctcacagca 260

                                                                       
Query: 61  tccttcccttgctgcatctccatttgagtccccatagccagagattctctgtctcaaccc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tccttcccttgctgcatctccatttgagtccccatggccagagattctctgtctcaaccc 320

                                                                       
Query: 121 aaacctgagctgctgaagtccctgttattatgtagtccagggatcccacagatagcagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacctgagctgctgaagtccctgttattatgtagtccagggatcccacagatagcagga 380

                                                                       
Query: 181 gcctggtggtttgagggacggctggcagcttggttcctgctggtcctggcagctgttatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctggtggtttgagggacggctggcagcttggttcctgctggtcctggcagctgttatg 440

                                               
Query: 241 tttagagattgcagtgtgatgcaaagggagccattt 276
             ||||||||||||||||||||||||||||||||||
Sbjct: 441 gctagagattgcagtgtgatgcaaagggagccattt 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)