BAC Information

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BAC

Clone NameMSMg01-160I21
Chromosome6 (Build37)
Map Location 46,278,133 - 46,278,405
singlet/doubletsinglet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160I21.T7 (MSMg01no160_i21.b1)MSMg01-160I21.TJ (MSMg01no160_i21.g1)
ACCAG360194AG360195
length801727
length of high quality
(start - end)
129 (115 - 243)276 (77 - 352)
definitionCHROMAT_FILE: MSMg01no160_i21.b1 PHD_FILE: MSMg01no160_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:33 2005CHROMAT_FILE: MSMg01no160_i21.g1 PHD_FILE: MSMg01no160_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCGGTACCGGGGCGCGGAATTCCTCTG
ATGCGTGATGAAAATGGAAGGGCCATTCTGATTACAGATTGTCAGGAACT
TTATTTTGGGCTTGTTATGGGTTCTTCTTTTTAATTTTTATTTGACCTCT
GCCTTAGGGTTTATAGTGATGTGCTAAAATACTATGATTAAAAGGAATTT
GGGAGGAAATGGTATATATATATATATATATATATATATATTTTTTTTTA
TATACATTTCTTTTTACCTTTTTTTACCCTTCTATTCAACCCCCCAAACC
CNAAATTACCCTCACATTTACAAACCCCCCCAACCCAAAAAAATAAAATT
TTTTTTTTTCCCCCCCCCCCCCACCTTATTTTTTTTTTTTTACACGTTTC
TTATGTGGTTTTTCCCCCCCCCAAAATAATAAACCCTTTTTCCTTTTTTT
CCTCTTTCTCTATTTTCTCATTTCCTCTTTCCGCTTCTTTTTTCTCATGC
GCACTACTCCTTTTATATTATATAATCTAATACCTTTGTCCCCTCACCAT
ATACCTCACCCTATTCTATCACTATATTTCTTTCTCTTCACACCCCCGAC
TCGCTCTGCTTTTTATTATCTTATACCTGTTCTTCTACTTACCTATTTTT
TCCCCCCCCCACTCTATTTCCTCTTATCAGCTCTTTTTTTCTCATCACTC
TAAACTCATCCCCCTTTTTTTTTATTTTTTTTATTCACCTAATGTTAGAT
TTTCTTGCTCCGTCTATATTCTCTTTTATAATCTACTTCCTTTCTGATCT
C
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTGTACTCTTTTGCAAAAGGTT
ATCACAGCAGGGTATGTTGATGGCTCATACCATCATGTTGAGGACAAAAT
AGGGCACCCAATTCTCTCCTGTTTATCCTACTGCTTCTTATACCAAGGCA
ACTGTGCATGTGACCTGGAAGAGGGGCTGGAGTATATGGATGGGCCTGGG
AAGTTAGAGGTTCCCCATCTATGCAGCTTTGGGGATTTCCTTCTCTGCTG
GGTAAGGCTTTCTCTTACTATTTTTTAGAGGAATGCCTACACAAACTAAT
TGGNTTTTTAAAGTAACTCTTGNACGANTTCCCGCTCAATTTGTCATAGG
GAATTTGGGANGACCCCCCCAATAAAAAAAAAAAAAAGGGGGGGGGGGTT
AGCGTTAATGTTTGGTTGTATAGGTCCTTCTATGTATAGTCAGTTCTCTC
CCCGAATGTTATGACGTTGTAATTCATGACCTATTTTCTCCATCTGAAAA
ACCCTTACCGATTTGTATTATCTTTTTTCCCACCTACTTTTATTCATTAT
CCTTTCTCTTTTGTACACCTCACCTCACCCCCCCCTACCCAATTAAATTC
ACCTCATCTTTTTTTCCTTCCTCTCCCTTTTTTTGTCCTCTTCCTTCCTT
CTCTTTTTTCCTTATTCTCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_i21.g1 MSMg01no160_i21.g1 CHROMAT_FILE:
MSMg01no160_i21.g1 PHD_FILE: MSMg01no160_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:33 2005
         (276 letters)



>mm_chr6_46277930_46278605
          Length = 676

 Score =  482 bits (249), Expect = e-140
 Identities = 267/273 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   tgtactcttttgcaaaaggttatcacagcagggtatgttgatggctcataccatcatgtt 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 476 tgtactcttttgcagaaggttatcacagcagggtatgttgatggctcataccatcatgtg 417

                                                                       
Query: 64  gaggacaaaatagggcacccaattctctcctgtttatcctactgcttcttataccaaggc 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaggacaaaatagggcaccctattctctcctgtttatcctactgcttcttataccaaggc 357

                                                                       
Query: 124 aactgtgcatgtgacctggaagaggggctggagtatatggatgggcctgggaagttagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aactgtgcatgtgacctggaagaggggctggagtatatggatgggcctgggaagttagag 297

                                                                       
Query: 184 gttccccatctatgcagctttggggatttccttctctgctgggtaaggctttctcttact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gttccccatctatgcagctttggggatttccttctctgctgggtaaggctttctcttact 237

                                            
Query: 244 attttttagaggaatgcctacacaaactaattg 276
           | |  ||||||||||||||||||||||||||||
Sbjct: 236 actgattagaggaatgcctacacaaactaattg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)