Query= MSMg01no160_l12.b1 MSMg01no160_l12.b1 CHROMAT_FILE:
MSMg01no160_l12.b1 PHD_FILE: MSMg01no160_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:45 2005
(310 letters)
>mm_chr6_18272609_18273318
Length = 710
Score = 534 bits (276), Expect = e-156
Identities = 298/306 (97%), Gaps = 2/306 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctagctctactctctatgattcttagaacacaaaccttccttttagatataat 63
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 ggaattcctagctctactctctatgattcttagaacacaaacattccttttagatataat 263
Query: 64 ctctttgagaatcccagttgaattagagcacaagacattaagttgggtctttaaactcaa 123
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 264 ctctttgagaatcccagttgaattagagcacaagacattaagttgggtctctaaacccaa 323
Query: 124 ctagattttttttttgtcaatttgatgcaagatagaattatctaggaaggggaaccccag 183
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 ctagattattttt--gtcaatttgatgcaagatagaattatctaggaaggggaacctcag 381
Query: 184 ttaacaaaatacctccaacaggttcactggaggtgaatctggagttcattttcttgattg 243
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 382 ttaacaaaatacctccaacaggttcactgtaggtgaatctggagttcattttcttgattg 441
Query: 244 aaattcatgtgggaggatctagatcactgtgagctacaacacccagattggtagtcctgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaattcatgtgggaggatctagatcactgtgagctacaacacccagattggtagtcctgg 501
Query: 304 atggtg 309
||||||
Sbjct: 502 atggtg 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no160_l12.g1 MSMg01no160_l12.g1 CHROMAT_FILE:
MSMg01no160_l12.g1 PHD_FILE: MSMg01no160_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:45 2005
(286 letters)
>mm_chr6_18353939_18354624
Length = 686
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Minus
Query: 1 tacatctattctgaaggcttctagcagaatactgacttctaggtagctaggatgagggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tacatctattctgaaggcttctagcagaatactgacttctaggtagctaggatgagggtc 600
Query: 61 ttatatcccacacccacagtgacatacctactccaacagggccatacatactccaacagg 120
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttatagcccacaccctcagtgacatacctactccaacagggccatacatactccaacagg 540
Query: 121 accacatcttctattagtgccaatccctgtgccaagcatatgcaaaccatcacgaggtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 accacatcttctattagtgccaatccctgtgccaagcatatgcaaaccatcacgaggtct 480
Query: 181 gaagtttattcttttcacatatctaacttgcagcaggtgagaggtctgggcatggtgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaagtttattcttttcacatatctaacttgcagcaggtgagaggtctgggcatggtgaac 420
Query: 241 atccaagttccagagtctcagcaccatattctactgttactgcttg 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atccaagttccagagtctcagcaccatattctactgttactgcttg 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
