BAC Information

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BAC

Clone NameMSMg01-160O21
Chromosome6 (Build37)
Map Location 23,345,800 - 23,346,080
singlet/doubletsinglet
Overlap geneCadps2
Upstream geneLOC100040959, LOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1
Downstream geneRnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1, LOC100041094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160O21.T7 (MSMg01no160_o21.b1)MSMg01-160O21.TJ (MSMg01no160_o21.g1)
ACCAG360467AG360468
length730728
length of high quality
(start - end)
254 (432 - 685)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no160_o21.b1 PHD_FILE: MSMg01no160_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:01 2005CHROMAT_FILE: MSMg01no160_o21.g1 PHD_FILE: MSMg01no160_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGTCCAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATTATGCCAATGCAAATCAAAACAACCCTAAGATTC
CACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACTGTATGATCCAGCAATACCTCTCCTGGGCAT
ATATCCTTATTTTTCCTCCCCCGCCCCCAAGGACACATGCTCCACTATGT
TCATAGCAGCATTACCCACAATAAAAAAAAACTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTA
GGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAA
AAATGAAGACTGAAGTGTGGACACTATGCN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGAAACTGACCAGATACAGTAG
GTCTCTTATTCCTCAAGCTTACATAAGTGAAAAGGACTGTTGAGAGATAT
TTTCAGACATTTCTTGATTTTGTGGGGTGATCTTTTGGTGGCTTTAGCTA
TCTTTGGGTTATTTCTGCTACTGTAAATAACCCCTGACCCGTAAAACTCA
GTTTGGGTCTGTTATTACTTCTCTGTCTCAGGTAAATAGACATTTGTTTA
TGACTCTTCCTCAAGAATGGTGTCATGCAACATCATAACCTGCCATGTTG
ACTAATATTACATGCGTCCNANACTTNACCCATAGAAGGATTAGAAAAAC
TATATAACCCTCCCCCCACAAAAAAAAAAAACTGCATTTCGGATAAGCAG
TATTTTTCACTGCCTGTATGCAGATATTATGTGCATGTTAGTATCTGTAT
ATACAGACGTGTGTGCGTGTGTGTGCGTCGCTTTTTCCCCTAACCAATTT
CCCTCACTCCCCTCTTTATTTTCTTTTCCCCTTCTCACAACACTTTCTTA
TCACCTCTATTTTTACATCCTACTTCCACCACCCCAACTCATTTCTTTTT
CCTTTTTATTTTTTCTCACCTCCTTCCTCACTTATTTCCCCCCACCCTCC
TTACATCTTTTTCATTACTCCCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_o21.g1 MSMg01no160_o21.g1 CHROMAT_FILE:
MSMg01no160_o21.g1 PHD_FILE: MSMg01no160_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:01 2005
         (282 letters)



>mm_chr6_23345433_23346114
          Length = 682

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgaaactgaccagatacagtaggtctcttattcctcaagcttacataagtgaaaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cctgaaactgaccagatacagtaggtctcttattcctcaagcttacataagtgaaaagga 589

                                                                       
Query: 61  ctgttgagagatattttcagacatttcttgattttgtggggtgatcttttggtggcttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctgttgagagatattttcagacatttcttgattttgtggggtgatcttttggtggcttta 529

                                                                       
Query: 121 gctatctttgggttatttctgctactgtaaataacccctgacccgtaaaactcagtttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gctatctttgggttatttctgctactgtaaataacccctgacccgtaaaactcagtttgg 469

                                                                       
Query: 181 gtctgttattacttctctgtctcaggtaaatagacatttgtttatgactcttcctcaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtctgttattacttctctgtctcaggtaaatagacatttgtttatgactcttcctcaaga 409

                                                    
Query: 241 atggtgtcatgcaacatcataacctgccatgttgactaata 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atggtgtcatgcaacatcataacctgccatgttgactaata 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)