BAC Information

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BAC

Clone NameMSMg01-161O10
Chromosome6 (Build37)
Map Location 36,431,260 - 36,431,621
singlet/doubletsinglet
Overlap genenone
Upstream geneMtpn, LOC100039312, LOC100039327, 9330158H04Rik
Downstream geneChrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161O10.T7 (MSMg01no161_o10.b1)MSMg01-161O10.TJ (MSMg01no161_o10.g1)
ACCAG361185AG361186
length1,2171,231
length of high quality
(start - end)
355 (42 - 396)327 (72 - 398)
definitionCHROMAT_FILE: MSMg01no161_o10.b1 PHD_FILE: MSMg01no161_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:02 2005CHROMAT_FILE: MSMg01no161_o10.g1 PHD_FILE: MSMg01no161_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTGCAGTGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTAAGAATAAATTATCTTATTACCCCATCCTGCTCTATATAAATGCATC
TCCTATACTGTTGAGCCTAGTGAGCCTGGATTTGTTTCCTGGGACCTCTG
TCTGAGCGAACTATGGAGGGTAGGAAAGGTTCAGTTGAGGTCCAGTCCTG
ATCTAACAAGCTGACCCACAGGACATAAACTAACGACCTTTGGAGATTCA
TCACTCAGGTGCCAGACCTTATCTGAAAACAATGTGGGGGACTTTACAAT
TTGACAACAAAGTCAACAGAGTCAGAAACGTGAGTGAGATCCTAGTGGAG
TCAAAATAAAACAAACAAACATCCTTAATATAAAGAAGCAAAAAACAATG
ATTAATTTCAAAACAATGCAAAATATTGATTACCAGGTAAATAAAAATGA
ACCTTTTTTTACCCCCCCCCCTAGAGAAAAGTTAGCTATTTAAAAAGCCA
CTGGGCAGATGTAGCCTTCAGGACATACATGGAAACTTTCCACCCTGAAG
ATCTGGACTTGGCTTAACCTATGGAAGCCGAACCCTGGTTTTTCGGTTTA
CCCTCCCTTCCCTTGGATGGGGTCCTTTGGTCCCTCCCCGGGCCGGGTGG
ACTTTCTAAGGTATTTCCCCGCTTTATTTGGTTCCTTTTGCCCTTAATCT
CCGGTTTCCCATTGGAACAATTATCTTTTCTTGGGGGACACGCCATTAAA
TTTGAAGGGAAGATTTCCCGGGGGAGGGTTCCCTCTTTTTCCCAGCAGGG
GATTCTTGGGACATTCCTTTCAAGCGGAAAAAAGGGGGAACTCTAAAAAG
GGGGGCCCTAAACAGGTAAAAAAAAAACCCCCTTTTTTTTTTCTTCGGGA
AACCGATTTTGGATTCCCCCACTTTTTAAAATCCCCGTTTTTTTGGGGGT
TTTGGAAAAACCTTTTTTTTTGTTTTTTTGTGGGGGGCCCGTGGTGTCCC
CCTTTTTATCCCCGGTGGCTCCCTTTTTTTGTTTTTCCCCCTACTCAAAA
CTTCCAAAATTTTTAAAAAATATAATATTTCTCCCCCCCCCCCATAAACT
CTCCTCCCAGGAAAAACACAAAATTCTTTGTAAAAAATATTTTTTTTTGT
TTTTTTTNTTNTAAACAAACACCACTCCTCCTTCATCTTTTCGTTTATTT
ATTTTTTTCTGTATAAA
NNNGGGAGAAGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCGGACAACCGGATCCTTCTACGGCAA
AGCTTTTATTGCTTCAACTTAAGGAAGACCCCGAACCCGGAAAATGGCGC
CGCGTACTATAGCCTGCAGCGTGATGTTTCAGCACCTGATGTGGCGTGAC
AGCACCTGATTAGTTGCTCGCCTATCACCCCATTACTATGCCCCGAGATG
GGCAGTGACTGGGCGTGAACTCACTCTTGCACTTGCGCATAAGGCTTGTT
TACTAGTTAGGCACAGTGGAAGCCAGCGCCATCTTATAATGGCGATTGCT
CACGGCACGGCACTCCACAGGGGAGTGCAAACATATACACCCATTCTGTA
TTTTTTTTTTGGGTGTTTATTAGAAAATTGGAAATATTTTTTAAATGGCA
AATTTTTTTTTTCCCCCCCCCCCCAGGNAATAATTTTTTNTGTGAAAAAA
AAAGGGGGGGTTTTTTGGGAAAATTTTTGGTTTAAATTTTAAAATTTTTT
AGGGAAGTTTTATTTAAAATAGAAAACCCCCCAGGAAAAGATTTTTTGGA
ATTTTTTTTTCCAAAAAGGGAAATTTAAAATTAAACCTCTCAAAATTTGG
ATTGGAAGGGAAGAAAAATTTGTTTGGGTTTAAGGGGTTTTTTTTTTTTT
TCTCTTTATTTTTTTCTTTCTTCTTTTTTTTTTTTTTTATCTTTTTTTGT
TCTTCCTTCTTTTTTTTTTTATTTTTTTCTTCTTGTTTTTTTTATTTCTT
TTTTTTTTTTTTATCTTCATTTTTTTTTTTTATCTCTTTATTTCATTTTC
CTTTTTTTTTTTCTTTTTCTTCTTCATTCTATTTTTTTTTTTCTCTTTTC
ATACTTCTTCTTATTTCTTTTTTTTTACTTCTTTTTTTACTCTTTTCTTT
TTATGTTTATTTTTTTTCTTTTTTATTCTTTTCTTCTTTTCTTTCTCTTT
TTTTTTTTTATTATTCCTTTTATTATCTTTTTTATTTTTTTCTTATTTTT
CTTCATTTTCTTTTTTTTCTTTTCTTTCTTTTCTTTCATACTTTTCTTTT
TTCTCTTATTTATTTTATTTCTTTTTTTTCTCTTTCTTTTTTTCTATTTC
ATTTTTGTTTCTTTTATTTTTCTTAACTTCTTTCTTTTCTTCCTTCTTAT
CTTTTTATTTCTCTTTTTATCTTTTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_o10.b1 MSMg01no161_o10.b1 CHROMAT_FILE:
MSMg01no161_o10.b1 PHD_FILE: MSMg01no161_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:02 2005
         (355 letters)



>mm_chr6_36431057_36431810
          Length = 754

 Score =  574 bits (297), Expect = e-168
 Identities = 341/363 (93%), Gaps = 13/363 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaagaataaattatcttattaccccatcctgctctatataaatgcatctcct 63
           |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctaagaataaattat-ttaaaaccccatcctgctctatataaatgcatctcct 262

                                                                       
Query: 64  atactgttgagcctagtgagcctggatttgtttcctgggacctctgtctgagcgaactat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atactgttgagcctagtgagcctggatttgtttcctgggacctctgtctgagcgaactat 322

                                                                       
Query: 124 ggagggtaggaaaggttcagttgaggtccagtcctgatctaacaagctgacccacaggac 183
           |||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |||
Sbjct: 323 ggagggtaggaaaggttcaggtgaggttctgtcctgatctaacaagctgacccacaagac 382

                                                                       
Query: 184 ataaactaacgacctttggagattcatcactcaggtgccagaccttatctgaaaacaatg 243
           ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 ataaactaatggcctttggagattcatcactcaggtgccagaccttatctgataacaatg 442

                                                                       
Query: 244 tgggggactttacaatttgacaacaaagtcaacagagtcagaaacgtgagtgagatccta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgggggactttacaatttgacaacaaagtcaacagagtcagaaacgtgagtgagatccta 502

                                                                       
Query: 304 gtggagtcaaaataaaacaaacaa------------acatccttaatataaagaagcaaa 351
           ||||||||||||||||||||||||            ||||||||||||||||||||||||
Sbjct: 503 gtggagtcaaaataaaacaaacaagcaaacaatcaaacatccttaatataaagaagcaaa 562

              
Query: 352 aaa 354
           |||
Sbjct: 563 aaa 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 754
Length adjustment: 9
Effective length of query: 346
Effective length of database: 745
Effective search space:   257770
Effective search space used:   257770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)