BAC Information

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BAC

Clone NameMSMg01-161P14
Chromosome6 (Build37)
Map Location 116,357,619 - 116,357,999
singlet/doubletsinglet
Overlap geneMarch8
Upstream genePparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1
Downstream geneAlox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161P14.T7 (MSMg01no161_p14.b1)MSMg01-161P14.TJ (MSMg01no161_p14.g1)
ACCAG361238AG361239
length1,2241,275
length of high quality
(start - end)
420 (27 - 446)385 (81 - 465)
definitionCHROMAT_FILE: MSMg01no161_p14.b1 PHD_FILE: MSMg01no161_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:13 2005CHROMAT_FILE: MSMg01no161_p14.g1 PHD_FILE: MSMg01no161_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGACTATGCGCGCTAAGNATCCTTAGGGAGAGGATCCGCGGAATTCTC
TGTACCTCATTTTTAATAGTGGTATTTGATTCTCTGGAGTCTAACTTCTT
GAGTTCTTTTTGTATATTGAGTATTAGCCCTCTGTTGGATATAGGATTGG
TAATTATCTTTTCCAAGTCTGTTGGTTGCTGTTTTGTTTTATTGACAGTG
TCCTTTGCCTCACAGAAGCTTTGTAATTTTGTGAGGTCCCATTTGTCTAT
TGTTGATCTTAGAGCATAAGCCACTGGTGTTCTGTTCAGGAAATTTTCTC
CTGTGCCCATGTGTTCTAGACTTTTCCCGACTTTCTCTTTTATTAGATTC
AGTGTATCTGGTTTTATGTGGAGGTCCTTGATCCACTTGGCCTTGATTTT
TGTACAGGGAAATAAGAATGGATCGATTTGAATTCTTCTACATGTTTTTT
TTCCCCCCGCCCCAGTACCATGTGATGAAAAAGAAAAAAACCACTGGATG
GTTTTAGCTCCTTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCAT
TTCTGGGTCTTCAATTCTATTCCATTCATCTACCTGTCTGTCTCTCTACC
AATACCATACAGTTTTTATTACTATTGCTCTGTAATGCAGCTTGCCAACC
TGTTTGCCATTGTGTAAAATGCAGAGGGGGCATAGGACACTGGAACCTTT
TTGTAAACAAACCATTGGGGCTCATGAAGCCAGGTATAAACCAGTGTGCT
TAAAACTCTCTGTAGGTCAGTAAACTCATTAGGTTTGTATCTGATGAGTG
GTACGCATTGATTGTTATTTAAAAGATATCGTCCTAAATAGTTCTGGTAA
ATGTTTTTGTCTCATTTATATATCTGGTCTTTTGAATTGTTTCCCCTCTG
CCTCCTAAACAGTTTGTCCTTATTTCTTATTTTTTTTCTCCTCACTTTCT
CCTCTTATTTTCTTTTTTTATTCTTTTTATCTTTCTTTCGTTTTTTAATT
TACTTTTTCTATTTTTTTAATCTTTTCTTTTTTTTCCTTTTTCTCTCTTC
TTTTACTTAACCACCTTATTTTCTTTATTTTTCTTCTTTTCCTTCTTCTT
CTTGTCTTCTTCTTTCTATTTCCTTTCCTTTGCTTTCTTTCTACACTTTC
TAACTACTTATCTCCTCCCTTTATCTTTATCTTCTTTATTACCTTTATCT
CTTTTTTATATCTTTTCTACATTC
CCAGTTTNNNNNNACAGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGACTCCAGGGAGTAGAC
AAGGGGATAACAGGACAGAATTTGCTTCCACAAGCCTTCTAGCTAGCCTC
CACATGCTTCTGAAAACTAAGCACGGGGCTTCTACTAGGAACTACAAAAG
ATTCATCTTCGGTTTGCCTCGGTCTCTGGAGAAGACAGGTGAAGCAGCCA
AAGCTCAGGGAGATGGACCCTAGGCATTGCCCTGGCCACCTCAGGAGAAT
CTGAAGACCCTGGAGCCGACAGCAGCCACTTGGAGAGTAGTACACTTCTG
CGGTTCCTCTTGTCACATTGTAAGTTGACTATTGCCTGGCACTTTGACAA
TGGACTTCAAGAAAAAAAATGTTCAACAAACTTTTTAAAGGGGCAATGGC
CACTTAGCAGTATTGATTTGACTCCGTCTGTCTTGTGAAAAAATCGTGCA
GGAGGTAACCCCAAGACAGAATAGGTCACATTGGAGCTAAGGACCCTAGT
GATCCTGTCAAGTCTGCTTAAGGCAATAAGTGGGTATGAGGCCAGGTCAG
TGACACAATGGCGATGCAATTAGCTGACTGCTCACCCAAGGCCTCATCCC
AGAGCTGGTCTGTTGACCTCCCAGCCCTCAGCAGTGACTCCACAGAACTT
TGTCAGCACAGGGGACAGGAGAGGTGGATCACAGGAGTGTCCCCAATGTG
TACCCACTCCATCTGGAGACATCTGTCAGTCAAAGGAGCATTTTTTTAAA
TGCTCACCCTGATTCAGATCCATTACATCTCANAACCCTTTCATTTCAAC
GCTCACAACAAAGAAATGTATGGGTGAGCTTGTGAGATAGGCCTTTTCAG
GAAACAGGCTCAAAACCAGAGGAATTACCCTCCTTAGCATCTTATTAATT
CCCCTGGAGGCCCCAAACCGTCTGTCTTGCTTAAAACTGAAACCTTTTCT
GGAACGGGAAGGGACTCTTCCTCCTCCTAAAATTTAAAGCAGAAAGGGGT
TCCGTTCCACTCTTGTGTGCAACAAAAAACAGGCGTAACAAAGAAAATTC
TAAACGGGGCCCCGGGTGTAACTTGTTGCTCCCCCTCTAACTCAGGAATT
CTAAATAAAATCTCTCTAAAAGGCGTGTTTTCTCGTAGGACACCCCCCCA
ACTAACACTCCGGCTTTGCGCTCCCCTGTCCCGTTTGCATTATCTTTCAT
TATNATTGCTTCTCTTTTTATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_p14.g1 MSMg01no161_p14.g1 CHROMAT_FILE:
MSMg01no161_p14.g1 PHD_FILE: MSMg01no161_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:13 2005
         (385 letters)



>mm_chr6_116357418_116358202
          Length = 785

 Score =  706 bits (365), Expect = 0.0
 Identities = 377/381 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   atgactccagggagtagacaaggggataacaggacagaatttgcttccacaagccttcta 61
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 582 atgactccagggagtagacaaggggataacaggacagaacttgcttccacaagccttcta 523

                                                                       
Query: 62  gctagcctccacatgcttctgaaaactaagcacggggcttctactaggaactacaaaaga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gctagcctccacatgcttctgaaaactaagcacggggcttctactaggaactacaaaaga 463

                                                                       
Query: 122 ttcatcttcggtttgcctcggtctctggagaagacaggtgaagcagccaaagctcaggga 181
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttcatcttcggtttgcctcagtctctggagaagacaggtgaagcagccaaagctcaggga 403

                                                                       
Query: 182 gatggaccctaggcattgccctggccacctcaggagaatctgaagaccctggagccgaca 241
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 402 gatggaccctaggcattgccctggccacctcaagagaatctgaagaccctggagccgaca 343

                                                                       
Query: 242 gcagccacttggagagtagtacacttctgcggttcctcttgtcacattgtaagttgacta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gcagccacttggagagtagtacacttctgcggttcctcttgtcacattgtaagttgacta 283

                                                                       
Query: 302 ttgcctggcactttgacaatggacttcaagaaaaaaaatgttcaacaaactttttaaagg 361
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttgcctggcactttgacaatggccttcaagaaaaaaaatgttcaacaaactttttaaagg 223

                                
Query: 362 ggcaatggccacttagcagta 382
           |||||||||||||||||||||
Sbjct: 222 ggcaatggccacttagcagta 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)