Query= MSMg01no162_b13.b1 MSMg01no162_b13.b1 CHROMAT_FILE:
MSMg01no162_b13.b1 PHD_FILE: MSMg01no162_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:23 2005
(321 letters)
>mm_chr6_24187825_24188541
Length = 717
Score = 563 bits (291), Expect = e-165
Identities = 309/317 (97%), Gaps = 4/317 (1%)
Strand = Plus / Minus
Query: 4 ggaattcccccaccccttgtttttaagggaattacccgaaatgactacaaagtgttttct 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattcccccaccccttgattttaagggaattacccgaaatgactacaaagtgttttct 457
Query: 64 agttaaatgcatgattggtcacagggctacagctggctgggctgagatggcacctgggaa 123
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 456 agttaaatgcatgattggtcacaaggctacagctggctgggctgagacggcacctgggaa 397
Query: 124 atgtcattttagcccacctggcatcacacccagaataataaagaactctgctactttgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atgtcattttagcccacctggcatcacacccagaataataaagaactctgctactttgaa 337
Query: 184 agaacatgagactgagcattgaatggaaatcaacaatgcatctctgaaaagaaagagaca 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 336 agaacatgagactgagcattgaatggaaatcaacaatgcatctctgaaaaga----gaca 281
Query: 244 gtgcagcaaagaattaagcatagagacacatatttagaaaaatcatggagatgcaatgta 303
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtgcagcaaagaatgaagcatagagacacatatttagaaaaatcatggagatgcaatgta 221
Query: 304 aaaaccacagagagtta 320
|||||||||||||||||
Sbjct: 220 aaaaccacagagagtta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 717
Length adjustment: 9
Effective length of query: 312
Effective length of database: 708
Effective search space: 220896
Effective search space used: 220896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no162_b13.g1 MSMg01no162_b13.g1 CHROMAT_FILE:
MSMg01no162_b13.g1 PHD_FILE: MSMg01no162_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:23 2005
(292 letters)
>mm_chr6_24037556_24038247
Length = 692
Score = 542 bits (280), Expect = e-158
Identities = 289/292 (98%)
Strand = Plus / Plus
Query: 1 tgtggttttgtgcacagagatgtttttataattatgtctcattttccttatataggtttc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggttttgtgcacagtgatgtttttataattatgtctcattttccttatataggtttc 260
Query: 61 taaacaaacacttttaaaaataaaaacaaacatttaattagaaaaaagggacaggagtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaacaaacacttttaaaaataaaaacaaacatttaattagaaaaaagggacaggagtgg 320
Query: 121 tttgaagaagagattttaagtgttttaggattttaccctgccatggccccttgctggaca 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgaagaagaaattttaagtgttttaggattttaccctgccatggccccttgctggaca 380
Query: 181 tctgctaacccaagtggagagtcagtgtctacaccagaagtggttacaggttcccattcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgctaacccaagtggagagtcagtgtctacaccagaagtggttacaggttcccattcc 440
Query: 241 cgtggttcgcgatagaaattagcttctggatattatcttcaaaatttgtaat 292
||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtggttcgtgatagaaattagcttctggatattatcttcaaaatttgtaat 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
