BAC Information

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BAC

Clone NameMSMg01-162C13
Chromosome6 (Build37)
Map Location 83,949,649 - 83,949,950
singlet/doubletsinglet
Overlap genenone
Upstream geneD6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml
Downstream geneDysf, LOC665114, 4930504D19Rik, Cyp26b1, Exoc6b, LOC665129
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162C13.T7 (MSMg01no162_c13.b1)MSMg01-162C13.TJ (MSMg01no162_c13.g1)
ACCAG361370AG361371
length689728
length of high quality
(start - end)
306 (48 - 353)347 (78 - 424)
definitionCHROMAT_FILE: MSMg01no162_c13.b1 PHD_FILE: MSMg01no162_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:28 2005CHROMAT_FILE: MSMg01no162_c13.g1 PHD_FILE: MSMg01no162_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCTGGAACTGGAGTTTTGGACAGTTGTGAGCTGCCATGTGGGT
TCTGAAAATCAAATCCAGCCCCTCTCTACAAGAACAAGTGCTCCTGACTT
CTGAGCCATCTCTCCAGCCTGGTTCACCTGTGCTTAAGCTGCTTGTATCA
GATATTTCATCACAGCAATGAGACATCTTCACAATTTAAACCTATCTCTA
CATAGCTGTCAAGGTATCATTGAACTCAAGCATTAAAGTAGGTTGGGATC
AAACCTGATTTTGGTCTTCATTCTGAAGTCTCCCATGTCATCAAACTATG
ATCTAAATAANGTGCCNTTCTNTCCCCAACCTAGTCTTTGGGATAGGGGT
GTCTACTGTGTCCCTTTAAAAAAAAAAGAGGAAGGAGTCCACCTTCACTT
CTTGCCTCTACACAGGGTTATGGGGTAGGAAGTCAAATTGTTCAGTGCAC
TTTCTCTAGCCCTACATGGAAACCTGATAGTTATTTTTCATGTCCTAGAT
AAACCTCAACCCACCAAAATTCTGATCATGCAGACAGGCACGACTCATTC
TCTGGGGAGGTTTGTGGGCTCCATCACCATCACCACTCTTAGCTCCCCAC
ACCTTCCACTTCTGCCCTTATTATTATAATTCCAAAGGA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTATAGAGTTGCAGACTCCT
TCAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTC
CATCCAACAACTAACTGCAAGCAGCCACTTCTGTGTTTGCCAGGCACTGG
CATAGCCTCACAAGAGACAGCTATATCAGGGTCCACAACAATACGAACTA
ACCAGTACTCCCAGAGCTCGTGTCTCTAGTTGCATATGTAGCAGAAGATG
GCCTAGCTGGCCATCATTGGGAAGAGAGGCCCCTAGATCTTGCAAACTTT
TTATGTCCCAGTACAGGGGGACACCAGGGCCAAGAAGTGGGAGTGGGTGG
ATAGGAGAGCAGGGGAGGGGGGGAGAGTTTCCTCCCCTCCTCCCCTCCTC
TTTTTTTTGTCTTTTTTCCATTTTTTTTCCCTCCTTTTCCTTTCTATTAT
TATTATATTGTTATTCCTCAGACTCCACACAATATCAAATATAAATCTAC
CCTTATTCACTTACATGTCCCCTATTTCATTAATTCCAACATAGATATAT
TAACGCAAAAGCACACTTCCTATCATTTTATCTTATTTCTTTCTATCCCT
ATTTTATTTATTATTATACAACTCCATATTCCCCTTCTATTATATCATAC
TTCATCTCTCCACCCATTTACAATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_c13.b1 MSMg01no162_c13.b1 CHROMAT_FILE:
MSMg01no162_c13.b1 PHD_FILE: MSMg01no162_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:28 2005
         (306 letters)



>mm_chr6_83949445_83950150
          Length = 706

 Score =  569 bits (294), Expect = e-166
 Identities = 300/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctggaactggagttttggacagttgtgagctgccatgtgggttctgaaaatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctggaactggagttttggacagttgtgagctgccatgtgggttctgaaaatca 264

                                                                       
Query: 65  aatccagcccctctctacaagaacaagtgctcctgacttctgagccatctctccagcctg 124
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatccaggtcctctctacaagaacaagtgctcctgacttctgagccatctctccagcctg 324

                                                                       
Query: 125 gttcacctgtgcttaagctgcttgtatcagatatttcatcacagcaatgagacatcttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttcacctgtgcttaagctgcttgtatcagatatttcatcacagcaatgagacatcttca 384

                                                                       
Query: 185 caatttaaacctatctctacatagctgtcaaggtatcattgaactcaagcattaaagtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatttaaacctatctctacatagctgtcaaggtatcattgaactcaagcattaaagtag 444

                                                                       
Query: 245 gttgggatcaaacctgattttggtcttcattctgaagtctcccatgtcatcaaactatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttgggatcaaacctgattttggtcttcattctgaagtctcccatgtcatcaaactatga 504

             
Query: 305 tc 306
           ||
Sbjct: 505 tc 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)