BAC Information

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BAC

Clone NameMSMg01-162C16
Chromosome6 (Build37)
Map Location 110,400,691 - 110,400,969
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162C16.T7 (MSMg01no162_c16.b1)MSMg01-162C16.TJ (MSMg01no162_c16.g1)
ACCAG361375AG361376
length699698
length of high quality
(start - end)		305 (47 - 351)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no162_c16.b1 PHD_FILE: MSMg01no162_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:28 2005CHROMAT_FILE: MSMg01no162_c16.g1 PHD_FILE: MSMg01no162_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCAGCTCTAAGCCCCATTTTTAATGGGGTTCTTTTGAGA
ACTATTTTAACAAATTTGGCTAATAAGTTCACTATACTAGATAGTTATTG
TCAAGTTGATCCAAGCTAGAATCCTTTGCGAAATAAGACTCTCAGTTGAA
AAACTGCCCCCATAAGATTTGTATGCAGGCAAATCTATGGGATACTTTCT
TGATTAATAATTGATGTGGTAGACCCTAACTCATGGCAGGGGCGGGGGGG
GGGGCAGAAAATCCCTTGGGCAGAAGGTCCTAGTTGATATGGTATAAGAA
AATATTTTGAGAACCTCCCCCCCCCCATCCACGGTGAGGCTAAGGGTAGC
CAGTCTTTTAGGCCGAAAAAGCCATGGTGTTTTATCTGGGTGATGGTGTT
TTATCACAGCAATAGAAAGCTAACTAGGACAATAGTTTTGGAACGTAAAA
TTCTAGTGGAAAGGAGGTTTTCTTAGAGGCAGTGTCTTAGCTGATTGATT
GTTGTTCACTATATAGTGGATCTTTGCTTAGACTGAGCTTATTACATAAA
TTGATGTAGATTTTGAAGAAATTGTTCATGGCATGATGTTGAAATAACGT
TATTTTTGAAAGACTACCGAGTATGAAATCATTTCGCAGATTTTAACCA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGTCCTGTTTACTACATTTTATCT
TGACATTGTCCTTGCCTGGTGTTCTGCTTTAGGCTGAGGTATATGGAGTG
AAAAAAGAGCTTGGTAGTTCTCATAGTATGAGAGTATGAATTTCTGTTTC
CGTTTAAAATTTATGTGTGAGAAGGACACACATTTAATCTACTAATCTTA
GGGAAATGGAATAAGAGCTCTATGAACTGAGTGAAATGAGTGCTGTCTAA
ACCAGCTGAAGACCTGCTGGCCTATAGACAAGGGCACAATAATACATTAT
TTTTTTTAGCTGCGCCCCCCCCCAGGTTAATTACTCAGCCACATTTCCAC
CAAAATCTAACCAACCAAATGAACTGAACGAGAAAAGAACCCATAATCTT
AAAATGTACTTATTTTTCTCTATGGAGGTGTTTGTAGATGGCTTTTAATT
TTGCAATGAGAAGATGTATTTAAAAGTCTTTAACACTGGAATTTTATATT
TGGAAAAGAGTGTAATGAGAGAATGTGTGTTCAAAAGGAGTCCTGTGTCC
ACTTTGAAACAGGAAATAATCTTAAAAGAATATACTTTAGCGCAGAGTCT
AGACCAAAGAGGTTGTGATGACTTCTTTGTTCCATTTTCAGAAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_c16.g1 MSMg01no162_c16.g1 CHROMAT_FILE:
MSMg01no162_c16.g1 PHD_FILE: MSMg01no162_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:28 2005
         (284 letters)



>mm_chr6_110400491_110401174
          Length = 684

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagtcctgtttactacattttatcttgacattgtccttgcctggtgttctgctttaggc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atagccctgtttactacattttatcttgacattgtccttgcctggtgttctgctttaggc 420

                                                                       
Query: 61  tgaggtatatggagtgaaaaaagagcttggtagttctcatagtatgagagtatgaatttc 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 419 tgaggtatatggagtgaaaaaagagcttggtagttctcatagtatgagggtatgaatttc 360

                                                                       
Query: 121 tgtttccgtttaaaatttatgtgtgagaaggacacacatttaatctactaatcttaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgtttccgtttaaaatttatgtgtgagaaggacacacatttaatctactaatcttaggga 300

                                                                       
Query: 181 aatggaataagagctctatgaactgagtgaaatgagtgctgtctaaaccagctgaagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aatggaataagagctctatgaactgagtgaaatgagtgctgtctaaaccagctgaagacc 240

                                                  
Query: 241 tgctggcctatagacaagggcacaataatacattatttt 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgctggcctatagacaagggcacaataatacattatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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