BAC Information

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BAC

Clone NameMSMg01-162L14
Chromosome6 (Build37)
Map Location 31,550,892 - 31,668,832
singlet/doubletdoublet
Overlap geneLOC620104
Upstream geneCpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1, Podxl, EG619959
Downstream gene1700012A03Rik, Plxna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162L14.T7 (MSMg01no162_l14.b1)MSMg01-162L14.TJ (MSMg01no162_l14.g1)
ACCAG361759AG361760
length737731
length of high quality
(start - end)
315 (43 - 357)293 (72 - 364)
definitionCHROMAT_FILE: MSMg01no162_l14.b1 PHD_FILE: MSMg01no162_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:10 2005CHROMAT_FILE: MSMg01no162_l14.g1 PHD_FILE: MSMg01no162_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,550,892 - 31,551,202)(31,668,540 - 31,668,832)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATCCCCAGCATCTGGACAACCTCCTCATGGAATTAGCTATGGGGTTC
ACCGACCAGTCCTCATATACCAGTATCCAGTACCCACCCTTCACTCAGGT
ACCTCTGAGCTCCCCACCACCAGGGTGAAGAGTGGACCACCCATTTTGGA
AGAAGGCACCACATCTGCGTCACTGAGTATGTGAGCCAGGCCCTAGCAGC
CACACAAGGGAAATTCAGGAACACAGACCAGAAGAAGGCCTGCTTCCCAG
CCGGCCCCTCCACTGTGTCACCATTGAGATGAAAAAAGGAGCCAGGGGAT
TCTTTGGAACTCATTATGTTCTGCCCCCCCGCCCCCCGAGAAGAGATGGG
AAACTGGAATAGAGTCAAAGGCCCCTCTCTCCATCTCAATGCCCAGAGAC
GAAGGGCAAAAAATGTAAGGAATTTCCAAAGTGCCTCCTTCGTACGGCAT
CTCTCCCACCCCTCTGGCTCCACTCCATAGTTCTCGCGGATGGTAATAGC
AGCCTTTCTTCTCCAGCGTGGGCCCGGTTTGCTGCCTGCTCCATTAACGC
TTGTATTCCACCCGGGTATTATAATCAGGCATCTCCCTATGTAACCCATG
TTCTTGCTGTTATGGTATACAACCACTTCTGTGCCACTGTAACGTGCGAT
GGGCCCTTGCACGATAGCTCTTCTGTGTCATTCTTAA
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCAGAAGGATAATGCCATGGCATTCACA
TGGGACAGATCTGGTTGGGGGTGGGGGAGTGCTGATCAGAGACCCTTCCT
GTCCTTCTACTTCATCTTGGCCTCCAGGAAGTATTAGACCTCAAGGCAAG
ATCAAATTTATTGGCCAAAATCAAATATTGAGGCCGAAGAACTAGACTAA
TGAGGCACTAGAGCCAATAACTCAGACACGTAATCTTTGTATCCATAAAA
GACCAATAACCTGGCAAGCTGCCATCTGGGGCAGCCATTTAGGACAAGCC
AAGGTAATCCATACTTTTTATAATTCCCTCCGCCCCCTGCAATGTAATTA
GCATCCCTGAAAAGGAGCATCCCCACTGTTTTCTTTTTATTTCACCAGCC
CATTCTTCCTTGCTCCTCAGTAATACTTAACACATTTAGAATGACTCCAC
AGCTTTTAAAACTTCCACTGGCTTAACACCTAATGTTTTTTTTCCTAAAA
CAGTAAGGAAATTCCTGGTTCTGGAGAAAATCGCACCCCCGACTGCCTTA
TACCCTCTTGCAGGCCCACATTCTGCAAATGGATGCGAGGACTTTTTGCA
GATCTATTCTGCACTTCGCATATGTTACCTTCGTTCCAATTGTAAACGAA
TCGCAACAATAGGTATTGGAGACAAAAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_l14.b1 MSMg01no162_l14.b1 CHROMAT_FILE:
MSMg01no162_l14.b1 PHD_FILE: MSMg01no162_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:10 2005
         (315 letters)



>mm_chr6_31550688_31551402
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatccccagcatctggacaacctcctcatggaattagctatggggttcaccgac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatccccagcatctggacaacctcctcatggaattagctatggggttcaccgac 264

                                                                       
Query: 65  cagtcctcatataccagtatccagtacccacccttcactcaggtacctctgagctcccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagtcctcatataccagtatccagtacccacccttcactcaggtacctctgagctcccca 324

                                                                       
Query: 125 ccaccagggtgaagagtggaccacccattttggaagaaggcaccacatctgcgtcactga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaccagggtgaagagtggaccacccattttggaagaaggcaccacatctgcgtcactga 384

                                                                       
Query: 185 gtatgtgagccaggccctagcagccacacaagggaaattcaggaacacagaccagaagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatgtgagccaggccctagcagccacacaagggaaattcaggaacacagaccagaagaa 444

                                                                       
Query: 245 ggcctgcttcccagccggcccctccactgtgtcaccattgagatgaaaaaaggagccagg 304
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 445 ggcctgcttcccagccggcccctccactgtgtcaccactgagataaaaaaaggagccagg 504

                      
Query: 305 ggattctttgg 315
           |||||||||||
Sbjct: 505 ggattctttgg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no162_l14.g1 MSMg01no162_l14.g1 CHROMAT_FILE:
MSMg01no162_l14.g1 PHD_FILE: MSMg01no162_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:10 2005
         (293 letters)



>mm_chr6_31668340_31669032
          Length = 693

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagaaggataatgccatggcattcacatgggacagatctggttgggggtgggggagtg 60
           ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 493 ctcagaaagataatgccatggcattcacgtgggacagatctggttgggggtgggggagtg 434

                                                                       
Query: 61  ctgatcagagacccttcctgtccttctacttcatcttggcctccaggaagtattagacct 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 433 ctgatcagagacccttcctgtccttctccttcatcttggcctccaggaagtattagacct 374

                                                                       
Query: 121 caaggcaagatcaaatttattggccaaaatcaaatattgaggccgaagaactagactaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caaggcaagatcaaatttattggccaaaatcaaatattgaggccgaagaactagactaat 314

                                                                       
Query: 181 gaggcactagagccaataactcagacacgtaatctttgtatccataaaagaccaataacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaggcactagagccaataactcagacacgtaatctttgtatccataaaagaccaataacc 254

                                                                
Query: 241 tggcaagctgccatctggggcagccatttaggacaagccaaggtaatccatac 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tggcaagctgccatctggggcagccatttaggacaagccaaggtaatccatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)