BAC Information

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BAC

Clone NameMSMg01-162O16
Chromosome6 (Build37)
Map Location 127,528,220 - 127,528,500
singlet/doubletsinglet
Overlap geneEfcab4b
Upstream geneKcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11
Downstream genePrmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162O16.T7 (MSMg01no162_o16.b1)MSMg01-162O16.TJ (MSMg01no162_o16.g1)
ACCAG361890
length697693
length of high quality
(start - end)
---275 (77 - 351)
definitionCHROMAT_FILE: MSMg01no162_o16.b1 PHD_FILE: MSMg01no162_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:23 2005CHROMAT_FILE: MSMg01no162_o16.g1 PHD_FILE: MSMg01no162_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTTTGCGTTTTGCTGCAAAGTCACTTTGCATTCCCTTAGCCGTCATA
AAACGGCAAAGCTGTTTATGCCAGGACTTCCTTGCATGAGTGXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCCGACCCTGTCTCTCCATC
TCTCCCTTTCTCTCTTACTCTTTCTCTCTTCCCCTCTTGCTCCCTCCCTC
TTTCCTGTGTGTGTGTGTGTGTGTGTGTATGAAACCCTGTCAACTCCAAA
GCATACTTCTGCACCACCTGTATCTTCCCCAGTCTCCTTGAGAGTCCCTT
AGCTCTACGAATGGGTCGTCCTTCCCTCCAAGCTCCACCTCTCCCACTAG
GAAGAGTGAGCTGTTTTATTACTAACAGGGAGACTTGGACCAAGGACAGC
AGATTAGGTTCTTTCCNAAGGCTGTNNCTGGGATGCTGAAATTGGNAGAT
AGCCTGACATCTTACCCAATAAAAAAAAAACCTGGCAAGCGTGGTGCCTC
TGCCGACACTGGTTTGGAGAGGAGGTAAAATAAGATTGGCTAGGAGATGG
AGCTCAGGAGGGGACAGCACGGTGAGAGGCAGTTGAGAGTGGCTTCTGGG
GCCTCCAGCAGCAGGGTAAGAATATGTGAGCTGAGACTCACTTGCCCCTC
ATGATGGTGCTGTGTTTTATTTCTTCCTAGAATCTTCCATCAGAGTGTCA
ACCCCTTTAAAGCAGCCGGTGAACTGCACTATTTCTCTTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_o16.g1 MSMg01no162_o16.g1 CHROMAT_FILE:
MSMg01no162_o16.g1 PHD_FILE: MSMg01no162_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:24 2005
         (275 letters)



>mm_chr6_127528024_127528700
          Length = 677

 Score =  435 bits (225), Expect = e-126
 Identities = 265/287 (92%), Gaps = 18/287 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctccgaccctgtctctccatctctccctttctctcttactctttctctcttcccctc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tctctccgactctgtctctccatctctccctttctctcttactctttctctcttcccctc 256

                                                                       
Query: 61  ttgctccctccctctttcctgtgtgtgtgtgtgtgtgtgtgt----atgaaaccctgtca 116
           |||||||||| |||||||||||||||||||||||||||||||    ||||||||||||||
Sbjct: 257 ttgctccctctctctttcctgtgtgtgtgtgtgtgtgtgtgtgtgtatgaaaccctgtca 316

                                                                       
Query: 117 actccaaagcatacttctgcaccacctgtatcttccccagtctccttgagag--tccctt 174
           |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||
Sbjct: 317 actccaaagcatacttctgcaccacctgtatcttcccccgtctccttgagagagtccctt 376

                                                                       
Query: 175 agctctacgaatgggtcgtccttccctccaagctccacctctcccactaggaagagtgag 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agctctacgaatgggtcgtccttccctccaagctccacctctcccactaggaagagtgag 436

                                                          
Query: 235 ctgtttt------attactaacagggagacttggaccaaggacagca 275
           |||          |  ||||||||||||||||||||||||| |||||
Sbjct: 437 ctg----gcagaaa--actaacagggagacttggaccaagggcagca 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 677
Length adjustment: 9
Effective length of query: 266
Effective length of database: 668
Effective search space:   177688
Effective search space used:   177688
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)