NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTAATATCTCCCAGGAACTAAAACTTGACAGAGATGAAAGG
ACTTGACCAACAGGAAAGCCCCGTGACCAACAGGAAAGCCCCGAAGGACA
CAGCTGGAATTCAAACCCGAGTTCTTGATTCTAAAGTGCTGCTCCTAACC
TTTTCCTGGCCTTCGGCCACCATGTAGGAACCTGGGTGGAGGAAAAGTGG
GAGGAGATTACCACTCCTACTAGCAGAGAAGGTCCTGTTTGAATTTTGAA
AGCCATGCTATGCTTGGCATATGTGCCTAGGCATGGGCATAGTCAGACTA
GGGATGCCTCTCGCTGGATAACAGGGAATCCTGTTTACATTTAAACACAA
ACACCTTGTTGGACCAGCCTATACTTAGGCTTTCGTGTGCTTCCTGCTTC
TCTTCCAGGTGTGCATTAAAGTCACCATCATCAATTTCACTGTAACTAAA
TCGGGTCTGGAGGATCAGTTGCTAAGGTAACCGGAACAGAGACTATGCAT
GGGGAGCTGGGTGGTGGTCATGGGTTTCCTAATGTTTTATTTAGAAGGGG
GTTTTGAGGTTTATTTTTTATATTAAATCCCGCGGATGCCACCATGACCC
TGCGTTTACCGACATTGATTGCATTACCTTTTCAATCTTTTTATGTCTCT
TAATCCCTCCTAGCTCGTTATTTCTTTTATTTATTTTTN

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTGAGGGAAGGTGATGGTATC
TTGGAAATGGGACATCACAGTGATGATAAAGGTGAACAGGAGAGCTGCCC
TTTAGTTCCACGTCTGAAAGCCAGGTAGGGTTTAGCCAAGCAATCTGTGA
TTGGGAGCTTGGGCACCCACAGTTGTACAATGATAGTGATAGAGGGGCTA
CTCCCCCAACATCACTAACAGGAACTGGATTCTGGCACCATAAAAAGTTA
CTCATGGGCCTTCCTTGTCACAGAGGGAGATGCCTCTGGGAAAATTGACA
ATGTAAGGGTGTTTTTATCGCCCCCCCCCCCCTCTGGTGAGAGAGAAAGT
GCCATTTAAAGGGATTCAACTTCAAAATTGCTTGAAAGAAGCCTTTCTTA
GCGACTCACCACTGTAATCCTACCTCTTGGGAGATAGAGGCAGGAGATTC
AAGCAGCCCAAGGTCACTCTTGCCATATTATAAGTCTGAGGCCAGCCTGG
GCTACATAAGATCCTGTCTCAGGTTTGTTGTTATTGTTGTTGTTTGCTTG
TTCTTTTAACTGAACAGAGCTAGCTGTGGTTGCTCATACCTGGAATCTAA
TTCTTAAATTTGAGGCCAGCCTTGGCTACTGTGTAGGGAATTCAGGCCTC
ACTATTTAGTCTAAATTAAACACACCCTCATACCCCC

Query= MSMg01no163_b21.b1 MSMg01no163_b21.b1 CHROMAT_FILE:
MSMg01no163_b21.b1 PHD_FILE: MSMg01no163_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:38 2005
         (571 letters)



>mm_chr6_73019105_73020075
          Length = 971

 Score = 1058 bits (547), Expect = 0.0
 Identities = 562/567 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttaatatctcccaggaactaaaacttgacagagatgaaaggacttgaccaaca 64
           ||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 771 gaattctttaataactaccaggaactaaaacttgacagagatgaaagggcttgaccaaca 712

                                                                       
Query: 65  ggaaagccccgtgaccaacaggaaagccccgaaggacacagctggaattcaaacccgagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ggaaagccccgtgaccaacaggaaagccccgaaggacacagctggaattcaaacccgagt 652

                                                                       
Query: 125 tcttgattctaaagtgctgctcctaaccttttcctggccttcggccaccatgtaggaacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tcttgattctaaagtgctgctcctaaccttttcctggccttcggccaccatgtaggaacc 592

                                                                       
Query: 185 tgggtggaggaaaagtgggaggagattaccactcctactagcagagaaggtcctgtttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tgggtggaggaaaagtgggaggagattaccactcctactagcagagaaggtcctgtttga 532

                                                                       
Query: 245 attttgaaagccatgctatgcttggcatatgtgcctaggcatgggcatagtcagactagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 attttgaaagccatgctatgcttggcatatgtgcctaggcatgggcatagtcagactagg 472

                                                                       
Query: 305 gatgcctctcgctggataacagggaatcctgtttacatttaaacacaaacaccttgttgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gatgcctctcgctggataacagggaatcctgtttacatttaaacacaaacaccttgttgg 412

                                                                       
Query: 365 accagcctatacttaggctttcgtgtgcttcctgcttctcttccaggtgtgcattaaagt 424
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 accagcctatacttagactttcgtgtgcttcctgcttctcttccaggtgtgcattaaagt 352

                                                                       
Query: 425 caccatcatcaatttcactgtaactaaatcgggtctggaggatcagttgctaaggtaacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 caccatcatcaatttcactgtaactaaatcgggtctggaggatcagttgctaaggtaacc 292

                                                                       
Query: 485 ggaacagagactatgcatggggagctgggtggtggtcatgggtttcctaatgttttattt 544
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 291 ggaacagagactatgcatggggagctcggtggtggtcatgggtttcctaatgttttattt 232

                                      
Query: 545 agaagggggttttgaggtttatttttt 571
           |||||||||||||||||||||||||||
Sbjct: 231 agaagggggttttgaggtttatttttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no163_b21.g1 MSMg01no163_b21.g1 CHROMAT_FILE:
MSMg01no163_b21.g1 PHD_FILE: MSMg01no163_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:38 2005
         (287 letters)



>mm_chr6_72890620_72891306
          Length = 687

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagttgagggaaggtgatggtatcttggaaatgggacatcacagtgatgataaaggtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttgagggaaggtgatggtatcttggaaatgggacatcacagtgatgataaaggtgaa 260

                                                                       
Query: 61  caggagagctgccctttagttccacgtctgaaagccaggtagggtttagccaagcaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggagagctgccctttagttccacgtctgaaagccaggtagggtttagccaagcaatct 320

                                                                       
Query: 121 gtgattgggagcttgggcacccacagttgtacaatgatagtgatagaggggctactcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgattgggagcttgggcacccacagttgtacaatgatagtgatagaggggctactcccc 380

                                                                       
Query: 181 caacatcactaacaggaactggattctggcaccataaaaagttactcatgggccttcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caacatcactaacaggaactggattctggcaccataaaaagttactcatgggccttcctt 440

                                                        
Query: 241 gtcacagagggagatgcctctgggaaaattgacaatgtaagggtg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcacagagggagatgcctctgggaaaattgacaatgtaagggtg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)